Variant report

Variant	rs72674872
Chromosome Location	chr1:57829209-57829210
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10493219	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889034	0.80[ASN][1000 genomes]
rs10889039	0.81[ASN][1000 genomes]
rs10889044	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11207007	0.81[ASN][1000 genomes]
rs11207010	0.81[ASN][1000 genomes]
rs11207018	0.81[ASN][1000 genomes]
rs11207020	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11207021	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11207022	0.80[ASN][1000 genomes]
rs11579258	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11581250	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11585284	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11585751	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11586826	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11589921	0.82[ASN][1000 genomes]
rs11590652	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11799925	0.87[ASN][1000 genomes]
rs12061812	0.89[ASN][1000 genomes]
rs12087888	0.81[ASN][1000 genomes]
rs12124445	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125219	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12127603	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12136107	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12137169	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12137540	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12137583	0.89[ASN][1000 genomes]
rs12139429	0.87[ASN][1000 genomes]
rs12142821	0.89[ASN][1000 genomes]
rs12566690	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17115685	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17115686	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17424216	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17425017	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17456661	0.89[ASN][1000 genomes]
rs17457873	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17459384	0.88[EUR][1000 genomes]
rs2052615	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2052616	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2052617	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2113454	0.87[ASN][1000 genomes]
rs2405994	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs267650	0.81[ASN][1000 genomes]
rs28706213	0.83[ASN][1000 genomes]
rs3909556	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3909557	0.80[ASN][1000 genomes]
rs4912162	0.89[ASN][1000 genomes]
rs4912163	0.89[ASN][1000 genomes]
rs4912237	0.89[ASN][1000 genomes]
rs55863020	0.89[ASN][1000 genomes]
rs61769670	0.87[ASN][1000 genomes]
rs6668257	0.81[ASN][1000 genomes]
rs6687842	0.87[ASN][1000 genomes]
rs7513076	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528735	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7540817	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871530	chr1:57793948-57858319	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871968	chr1:57803349-57858319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv954	chr1:57823140-57865799	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57819400-57832000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:57823800-57833200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:57826000-57829600	Enhancers	Fetal Heart	heart
4	chr1:57827400-57829800	Weak transcription	Fetal Brain Male	brain
5	chr1:57827400-57833800	Weak transcription	Fetal Brain Female	brain
6	chr1:57828200-57829600	Enhancers	Left Ventricle	heart
7	chr1:57828600-57836800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:57829200-57833000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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