Variant report

Variant	rs4912162
Chromosome Location	chr1:57796806-57796807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10493219	0.83[ASN][1000 genomes]
rs1077424	0.85[ASN][1000 genomes]
rs1077425	0.85[ASN][1000 genomes]
rs10889034	0.91[ASN][1000 genomes]
rs10889035	0.82[ASN][1000 genomes]
rs10889036	0.85[ASN][1000 genomes]
rs11207007	0.91[ASN][1000 genomes]
rs11207010	0.91[ASN][1000 genomes]
rs11207011	0.88[ASN][1000 genomes]
rs11207012	0.85[ASN][1000 genomes]
rs11207013	0.82[ASN][1000 genomes]
rs11207014	0.85[ASN][1000 genomes]
rs11207015	0.85[ASN][1000 genomes]
rs11207020	0.85[ASN][1000 genomes]
rs11207021	0.83[ASN][1000 genomes]
rs11579258	0.83[ASN][1000 genomes]
rs11581250	0.83[ASN][1000 genomes]
rs11585284	0.83[ASN][1000 genomes]
rs11586826	0.83[ASN][1000 genomes]
rs11589921	0.93[ASN][1000 genomes]
rs11799925	0.87[ASN][1000 genomes]
rs12061812	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085326	0.88[ASN][1000 genomes]
rs12087888	0.91[ASN][1000 genomes]
rs12124445	0.83[ASN][1000 genomes]
rs12125219	0.83[ASN][1000 genomes]
rs12127603	0.83[ASN][1000 genomes]
rs12128305	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12136107	0.83[ASN][1000 genomes]
rs12137540	0.82[ASN][1000 genomes]
rs12137583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139429	0.87[ASN][1000 genomes]
rs12142821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240439	0.81[ASN][1000 genomes]
rs12566690	0.85[ASN][1000 genomes]
rs1504594	0.85[ASN][1000 genomes]
rs166514	0.85[ASN][1000 genomes]
rs17115685	0.83[ASN][1000 genomes]
rs17115686	0.83[ASN][1000 genomes]
rs17424216	0.83[ASN][1000 genomes]
rs17456661	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17457873	0.83[ASN][1000 genomes]
rs1809976	0.82[ASN][1000 genomes]
rs2052617	0.83[ASN][1000 genomes]
rs2113454	0.87[ASN][1000 genomes]
rs2113456	0.85[ASN][1000 genomes]
rs2161808	0.82[ASN][1000 genomes]
rs267646	0.81[ASN][1000 genomes]
rs267647	0.84[ASN][1000 genomes]
rs267650	0.91[ASN][1000 genomes]
rs267651	0.90[ASN][1000 genomes]
rs28706213	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35804651	0.82[ASN][1000 genomes]
rs390203	0.81[ASN][1000 genomes]
rs3909556	0.83[ASN][1000 genomes]
rs4912163	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55863020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61769668	0.85[ASN][1000 genomes]
rs61769670	0.87[ASN][1000 genomes]
rs6587767	0.90[ASN][1000 genomes]
rs6668257	0.91[ASN][1000 genomes]
rs6687842	0.87[ASN][1000 genomes]
rs72674872	0.89[ASN][1000 genomes]
rs7513076	0.82[ASN][1000 genomes]
rs7528735	0.85[ASN][1000 genomes]
rs7540817	0.85[ASN][1000 genomes]
rs7543805	0.85[ASN][1000 genomes]
rs7547509	0.82[ASN][1000 genomes]
rs77510	0.82[ASN][1000 genomes]
rs77511	0.82[ASN][1000 genomes]
rs882283	0.82[ASN][1000 genomes]
rs90940	0.82[ASN][1000 genomes]
rs924848	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871530	chr1:57793948-57858319	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57791200-57798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57792400-57806200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57794000-57801400	Weak transcription	Fetal Brain Male	brain

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