Variant report

Variant	rs12085326
Chromosome Location	chr1:57797597-57797598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57797489..57800179-chr1:57802405..57805312,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10047071	0.85[ASN][1000 genomes]
rs10047073	0.85[ASN][1000 genomes]
rs10047177	0.80[ASN][1000 genomes]
rs1077424	0.90[ASN][1000 genomes]
rs1077425	0.90[ASN][1000 genomes]
rs10889035	0.93[ASN][1000 genomes]
rs10889036	0.90[ASN][1000 genomes]
rs10889037	0.88[ASN][1000 genomes]
rs10889039	0.83[ASN][1000 genomes]
rs11207010	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11207011	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11207012	0.90[ASN][1000 genomes]
rs11207013	0.93[ASN][1000 genomes]
rs11207014	0.90[ASN][1000 genomes]
rs11207015	0.90[ASN][1000 genomes]
rs11207016	0.85[ASN][1000 genomes]
rs11207017	0.88[ASN][1000 genomes]
rs11207018	0.83[ASN][1000 genomes]
rs1149630	0.90[ASN][1000 genomes]
rs11589921	0.82[ASN][1000 genomes]
rs11590708	0.85[ASN][1000 genomes]
rs12061812	0.88[ASN][1000 genomes]
rs12087888	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12119147	0.87[ASN][1000 genomes]
rs12119210	0.85[ASN][1000 genomes]
rs12126723	0.85[ASN][1000 genomes]
rs12137583	0.88[ASN][1000 genomes]
rs12142821	0.88[ASN][1000 genomes]
rs12240237	0.85[ASN][1000 genomes]
rs1240439	0.93[ASN][1000 genomes]
rs12405761	0.85[ASN][1000 genomes]
rs12565446	0.85[ASN][1000 genomes]
rs12565636	0.85[ASN][1000 genomes]
rs12741210	0.88[ASN][1000 genomes]
rs1364444	0.85[ASN][1000 genomes]
rs1424462	0.85[ASN][1000 genomes]
rs1424463	0.85[ASN][1000 genomes]
rs1424464	0.85[ASN][1000 genomes]
rs1424465	0.88[ASN][1000 genomes]
rs1424467	0.85[ASN][1000 genomes]
rs1424468	0.85[ASN][1000 genomes]
rs1424469	0.85[ASN][1000 genomes]
rs1424470	0.85[ASN][1000 genomes]
rs1504594	0.90[ASN][1000 genomes]
rs166514	0.90[ASN][1000 genomes]
rs17423255	0.85[ASN][1000 genomes]
rs17456661	0.88[ASN][1000 genomes]
rs1809976	0.93[ASN][1000 genomes]
rs1834151	0.85[ASN][1000 genomes]
rs1862925	0.88[ASN][1000 genomes]
rs2113453	0.81[ASN][1000 genomes]
rs2113456	0.90[ASN][1000 genomes]
rs2161808	0.87[ASN][1000 genomes]
rs2216808	0.81[ASN][1000 genomes]
rs2405696	0.86[ASN][1000 genomes]
rs267638	0.86[ASN][1000 genomes]
rs267646	0.93[ASN][1000 genomes]
rs267647	0.90[ASN][1000 genomes]
rs267650	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267651	0.85[ASN][1000 genomes]
rs28706213	0.83[ASN][1000 genomes]
rs35804651	0.93[ASN][1000 genomes]
rs374845	0.90[ASN][1000 genomes]
rs390203	0.86[ASN][1000 genomes]
rs439378	0.90[ASN][1000 genomes]
rs4912162	0.88[ASN][1000 genomes]
rs4912163	0.88[ASN][1000 genomes]
rs4912237	0.88[ASN][1000 genomes]
rs55863020	0.88[ASN][1000 genomes]
rs61769668	0.90[ASN][1000 genomes]
rs61769725	0.81[ASN][1000 genomes]
rs6587767	0.85[ASN][1000 genomes]
rs6665166	0.87[ASN][1000 genomes]
rs6669975	0.86[ASN][1000 genomes]
rs6677561	0.85[ASN][1000 genomes]
rs6687934	0.87[ASN][1000 genomes]
rs736109	0.90[ASN][1000 genomes]
rs736110	0.90[ASN][1000 genomes]
rs746937	0.90[ASN][1000 genomes]
rs7535763	0.86[ASN][1000 genomes]
rs7543805	0.90[ASN][1000 genomes]
rs7547412	0.88[ASN][1000 genomes]
rs7547509	0.93[ASN][1000 genomes]
rs77510	0.93[ASN][1000 genomes]
rs77511	0.93[ASN][1000 genomes]
rs882283	0.93[ASN][1000 genomes]
rs90940	0.93[ASN][1000 genomes]
rs94216	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871530	chr1:57793948-57858319	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57791200-57798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57792400-57806200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57794000-57801400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links