Variant report

Variant	rs61769670
Chromosome Location	chr1:57823032-57823033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10493219	0.82[ASN][1000 genomes]
rs10493221	0.81[ASN][1000 genomes]
rs1077424	0.87[ASN][1000 genomes]
rs1077425	0.87[ASN][1000 genomes]
rs10889034	0.85[EUR][1000 genomes]
rs10889035	0.84[ASN][1000 genomes]
rs10889036	0.87[ASN][1000 genomes]
rs10889037	0.88[ASN][1000 genomes]
rs10889039	0.90[ASN][1000 genomes]
rs10889042	0.81[ASN][1000 genomes]
rs10889043	0.81[ASN][1000 genomes]
rs11207007	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11207012	0.87[ASN][1000 genomes]
rs11207013	0.84[ASN][1000 genomes]
rs11207014	0.87[ASN][1000 genomes]
rs11207015	0.87[ASN][1000 genomes]
rs11207016	0.91[ASN][1000 genomes]
rs11207017	0.88[ASN][1000 genomes]
rs11207018	0.90[ASN][1000 genomes]
rs11207020	0.83[ASN][1000 genomes]
rs11207021	0.82[ASN][1000 genomes]
rs11207022	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11207024	0.81[ASN][1000 genomes]
rs11207025	0.81[ASN][1000 genomes]
rs11207026	0.81[ASN][1000 genomes]
rs11207028	0.81[ASN][1000 genomes]
rs11207029	0.81[ASN][1000 genomes]
rs11579258	0.82[ASN][1000 genomes]
rs11581250	0.82[ASN][1000 genomes]
rs11585284	0.82[ASN][1000 genomes]
rs11586826	0.82[ASN][1000 genomes]
rs11588755	0.86[ASN][1000 genomes]
rs11589921	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11590708	0.91[ASN][1000 genomes]
rs11799925	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803514	0.81[ASN][1000 genomes]
rs12061812	0.87[ASN][1000 genomes]
rs12092706	0.81[ASN][1000 genomes]
rs12119147	0.90[ASN][1000 genomes]
rs12119210	0.91[ASN][1000 genomes]
rs12124445	0.82[ASN][1000 genomes]
rs12125219	0.82[ASN][1000 genomes]
rs12126723	0.91[ASN][1000 genomes]
rs12127603	0.82[ASN][1000 genomes]
rs12136107	0.82[ASN][1000 genomes]
rs12137540	0.80[ASN][1000 genomes]
rs12137583	0.87[ASN][1000 genomes]
rs12139429	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142821	0.87[ASN][1000 genomes]
rs12240237	0.91[ASN][1000 genomes]
rs12565446	0.91[ASN][1000 genomes]
rs12565636	0.91[ASN][1000 genomes]
rs12566690	0.83[ASN][1000 genomes]
rs12741210	0.88[ASN][1000 genomes]
rs1364444	0.91[ASN][1000 genomes]
rs1424462	0.91[ASN][1000 genomes]
rs1424463	0.91[ASN][1000 genomes]
rs1424464	0.91[ASN][1000 genomes]
rs1424465	0.88[ASN][1000 genomes]
rs1424467	0.91[ASN][1000 genomes]
rs1424468	0.91[ASN][1000 genomes]
rs1424469	0.91[ASN][1000 genomes]
rs1424470	0.91[ASN][1000 genomes]
rs1504594	0.87[ASN][1000 genomes]
rs166514	0.87[ASN][1000 genomes]
rs17115685	0.82[ASN][1000 genomes]
rs17115686	0.82[ASN][1000 genomes]
rs17115750	0.81[ASN][1000 genomes]
rs17423255	0.91[ASN][1000 genomes]
rs17424216	0.82[ASN][1000 genomes]
rs17456661	0.87[ASN][1000 genomes]
rs17457873	0.82[ASN][1000 genomes]
rs17458730	0.81[ASN][1000 genomes]
rs17458751	0.81[ASN][1000 genomes]
rs1778032	0.81[ASN][1000 genomes]
rs1778033	0.81[ASN][1000 genomes]
rs1809976	0.84[ASN][1000 genomes]
rs1834151	0.91[ASN][1000 genomes]
rs1862925	0.88[ASN][1000 genomes]
rs2052617	0.82[ASN][1000 genomes]
rs2113453	0.80[ASN][1000 genomes]
rs2113454	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113456	0.87[ASN][1000 genomes]
rs2161808	0.84[ASN][1000 genomes]
rs267651	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs269048	0.81[ASN][1000 genomes]
rs269049	0.81[ASN][1000 genomes]
rs269050	0.81[ASN][1000 genomes]
rs269057	0.81[ASN][1000 genomes]
rs28706213	0.82[ASN][1000 genomes]
rs35804651	0.84[ASN][1000 genomes]
rs3738553	0.84[ASN][1000 genomes]
rs3844041	0.81[ASN][1000 genomes]
rs3850549	0.81[ASN][1000 genomes]
rs3850550	0.81[ASN][1000 genomes]
rs3850552	0.81[ASN][1000 genomes]
rs3850556	0.81[ASN][1000 genomes]
rs3861834	0.81[ASN][1000 genomes]
rs3896279	0.81[ASN][1000 genomes]
rs3909556	0.82[ASN][1000 genomes]
rs3909557	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4912162	0.87[ASN][1000 genomes]
rs4912163	0.87[ASN][1000 genomes]
rs4912237	0.87[ASN][1000 genomes]
rs4912246	0.81[ASN][1000 genomes]
rs4912247	0.81[ASN][1000 genomes]
rs511115	0.81[ASN][1000 genomes]
rs515148	0.81[ASN][1000 genomes]
rs516918	0.81[ASN][1000 genomes]
rs517825	0.81[ASN][1000 genomes]
rs532926	0.81[ASN][1000 genomes]
rs539310	0.81[ASN][1000 genomes]
rs553674	0.81[ASN][1000 genomes]
rs55863020	0.87[ASN][1000 genomes]
rs563099	0.81[ASN][1000 genomes]
rs563270	0.81[ASN][1000 genomes]
rs564880	0.81[ASN][1000 genomes]
rs564951	0.81[ASN][1000 genomes]
rs565032	0.81[ASN][1000 genomes]
rs566847	0.81[ASN][1000 genomes]
rs61769668	0.87[ASN][1000 genomes]
rs61769756	0.81[ASN][1000 genomes]
rs6587767	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6587768	0.81[ASN][1000 genomes]
rs6665166	0.87[ASN][1000 genomes]
rs6668257	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6677561	0.91[ASN][1000 genomes]
rs6687842	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687934	0.90[ASN][1000 genomes]
rs72674872	0.87[ASN][1000 genomes]
rs72674892	0.81[ASN][1000 genomes]
rs7513076	0.80[ASN][1000 genomes]
rs7528735	0.83[ASN][1000 genomes]
rs7540817	0.83[ASN][1000 genomes]
rs7543805	0.87[ASN][1000 genomes]
rs7547509	0.84[ASN][1000 genomes]
rs77510	0.84[ASN][1000 genomes]
rs77511	0.84[ASN][1000 genomes]
rs882283	0.84[ASN][1000 genomes]
rs90940	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871530	chr1:57793948-57858319	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871968	chr1:57803349-57858319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57800000-57826600	Weak transcription	Left Ventricle	heart
2	chr1:57817600-57826600	Weak transcription	Fetal Brain Male	brain
3	chr1:57819400-57826600	Weak transcription	Fetal Stomach	stomach
4	chr1:57819400-57832000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:57821400-57826000	Weak transcription	Fetal Heart	heart
6	chr1:57821800-57823600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:57822000-57824000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:57822200-57823200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:57822400-57823200	Enhancers	Fetal Brain Female	brain
10	chr1:57822400-57823400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:57822400-57823600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:57822400-57823800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:57822400-57824000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:57822400-57824200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:57822600-57823600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:57822600-57823800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:57822600-57824200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:57823000-57823200	Weak transcription	H9 Cell Line	embryonic stem cell

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