Variant report

Variant	rs11207007
Chromosome Location	chr1:57793355-57793356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10493218	0.90[LWK][hapmap]
rs10493219	0.81[CHB][hapmap]
rs10493221	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1077424	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1077425	0.90[ASN][1000 genomes]
rs10889034	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10889035	0.87[ASN][1000 genomes]
rs10889036	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10889037	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10889038	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10889039	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10889041	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10889042	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs11207010	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs11207011	0.81[CHB][hapmap]
rs11207012	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11207013	0.87[ASN][1000 genomes]
rs11207014	0.90[ASN][1000 genomes]
rs11207015	0.90[ASN][1000 genomes]
rs11207016	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11207017	0.82[ASN][1000 genomes]
rs11207018	0.83[ASN][1000 genomes]
rs11207022	0.82[ASN][1000 genomes]
rs11207026	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap]
rs11207027	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11585751	0.81[CHB][hapmap]
rs11589921	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11590708	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11799925	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12061812	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs12087888	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs12119147	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12119210	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12126723	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12128305	0.86[ASN][1000 genomes]
rs12136107	0.81[CHB][hapmap]
rs12137169	0.81[CHB][hapmap]
rs12137583	0.91[ASN][1000 genomes]
rs12139429	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12142821	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs12240237	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12565446	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12565636	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12741210	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1364444	0.85[ASN][1000 genomes]
rs1424462	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1424463	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1424464	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1424465	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1424466	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1424467	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1424468	0.85[ASN][1000 genomes]
rs1424469	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1424470	0.85[ASN][1000 genomes]
rs1504594	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs166514	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17115686	0.81[CHB][hapmap]
rs17115750	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17423255	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17424216	0.81[CHB][hapmap]
rs17425017	0.81[CHB][hapmap]
rs17456661	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs17458730	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1778032	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1809976	0.87[ASN][1000 genomes]
rs1834151	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1862925	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2113454	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2113456	0.90[ASN][1000 genomes]
rs2161808	0.87[ASN][1000 genomes]
rs2405697	0.89[JPT][hapmap]
rs2405994	0.81[CHB][hapmap]
rs267650	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs267651	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs269038	0.89[JPT][hapmap]
rs269044	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs269045	0.89[JPT][hapmap]
rs269048	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs269049	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs269050	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs269057	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs28706213	0.89[ASN][1000 genomes]
rs35804651	0.87[ASN][1000 genomes]
rs3738553	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs3844041	0.88[CHB][hapmap];0.84[TSI][hapmap]
rs3850549	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs3850550	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs3850552	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[TSI][hapmap]
rs3850556	0.89[TSI][hapmap]
rs3861833	0.89[JPT][hapmap]
rs3861834	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs3896279	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs3909556	0.81[CHB][hapmap]
rs3909557	0.82[ASN][1000 genomes]
rs4912162	0.91[ASN][1000 genomes]
rs4912163	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs4912237	0.91[ASN][1000 genomes]
rs4912244	0.88[CHB][hapmap]
rs499339	1.00[JPT][hapmap]
rs532926	0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs540431	0.89[JPT][hapmap]
rs55863020	0.91[ASN][1000 genomes]
rs563099	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs563270	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap]
rs564951	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs565032	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs566847	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs567773	0.89[JPT][hapmap]
rs574726	1.00[JPT][hapmap]
rs61769668	0.90[ASN][1000 genomes]
rs61769670	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6587767	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6665166	0.80[ASN][1000 genomes]
rs6668257	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6677561	0.85[ASN][1000 genomes]
rs6687842	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6687934	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72674872	0.81[ASN][1000 genomes]
rs7543805	0.90[ASN][1000 genomes]
rs7547412	0.82[ASN][1000 genomes]
rs7547509	0.87[ASN][1000 genomes]
rs77510	0.87[ASN][1000 genomes]
rs77511	0.87[ASN][1000 genomes]
rs882283	0.87[ASN][1000 genomes]
rs90940	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs924848	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57785200-57793800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57787200-57793800	Weak transcription	Fetal Brain Male	brain
3	chr1:57790400-57793400	Enhancers	Colon Smooth Muscle	Colon
4	chr1:57791200-57794200	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:57791200-57798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:57792400-57806200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:57792800-57794200	Enhancers	Fetal Brain Female	brain
8	chr1:57793200-57793400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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