Variant report

Variant	rs1746
Chromosome Location	chr6:144671259-144671260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144671254..144672966-chr6:144680487..144682454,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2473157	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4574662	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9321970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390166	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
2	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
4	chr6:144663400-144675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:144667600-144671400	Enhancers	Right Atrium	heart
7	chr6:144667600-144674800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:144668600-144671400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:144668800-144672400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:144668800-144672600	Weak transcription	Esophagus	oesophagus
11	chr6:144668800-144673000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:144668800-144673000	Weak transcription	Placenta	Placenta
13	chr6:144668800-144681600	Weak transcription	Small Intestine	intestine
14	chr6:144669000-144672600	Weak transcription	HSMMtube	muscle
15	chr6:144669400-144672600	Weak transcription	Right Ventricle	heart
16	chr6:144669400-144673000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:144669800-144671400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:144670200-144671400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:144670200-144671400	Enhancers	Adipose Nuclei	Adipose
20	chr6:144670200-144671400	Enhancers	Fetal Thymus	thymus
21	chr6:144670400-144671800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:144670400-144671800	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:144670400-144672000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:144670400-144672200	Enhancers	Liver	Liver
25	chr6:144670400-144672200	Enhancers	Osteobl	bone
26	chr6:144670400-144673400	Flanking Active TSS	HUVEC	blood vessel
27	chr6:144670400-144674000	Flanking Active TSS	Dnd41	blood
28	chr6:144670400-144674200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr6:144670400-144674200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:144670600-144671400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:144670600-144671400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:144670600-144671600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:144670600-144671800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:144670600-144671800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr6:144670600-144671800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:144670600-144671800	Enhancers	HSMM	muscle
37	chr6:144670600-144672000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:144670600-144672400	Weak transcription	Psoas Muscle	Psoas
39	chr6:144670600-144672800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:144670600-144673200	Genic enhancers	HepG2	liver
41	chr6:144670800-144671400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:144670800-144671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:144670800-144671400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:144670800-144671400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:144670800-144671400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr6:144670800-144671400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:144670800-144671400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:144670800-144671400	Enhancers	Stomach Mucosa	stomach
49	chr6:144670800-144671400	Flanking Active TSS	Hela-S3	cervix
50	chr6:144670800-144671400	Enhancers	NHDF-Ad	bronchial

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