Variant report

Variant	rs2473157
Chromosome Location	chr6:144661258-144661259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144646379..144648634-chr6:144659334..144661793,2	K562	blood:
2	chr6:144656543..144658129-chr6:144660023..144661876,2	K562	blood:
3	chr6:144652090..144653631-chr6:144659810..144661477,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1746	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2982240	0.94[ASN][1000 genomes]
rs9321970	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9390166	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144643800-144663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
3	chr6:144652000-144668200	Weak transcription	Aorta	Aorta
4	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:144653400-144662800	Weak transcription	Osteobl	bone
6	chr6:144653400-144665200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:144653600-144661400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:144653600-144662000	Weak transcription	NHLF	lung
9	chr6:144653600-144665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:144655400-144662000	Weak transcription	HUVEC	blood vessel
11	chr6:144656000-144661400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:144656000-144664200	Weak transcription	Fetal Kidney	kidney
13	chr6:144656000-144665200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:144656000-144665200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:144656000-144668400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:144656000-144670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:144656600-144664800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:144656800-144661400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:144657000-144662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:144657000-144670800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:144657200-144664000	Enhancers	Primary B cells from cord blood	blood
22	chr6:144657200-144664800	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:144657200-144665200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:144657400-144662600	Weak transcription	HSMM	muscle
25	chr6:144657400-144665000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:144657600-144662800	Weak transcription	Brain Substantia Nigra	brain
27	chr6:144657800-144666400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:144658200-144662600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:144658200-144664400	Weak transcription	Fetal Intestine Large	intestine
30	chr6:144658200-144668200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:144658400-144662000	Weak transcription	Dnd41	blood
32	chr6:144658400-144662800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:144658400-144664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:144658400-144664400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:144658400-144670400	Weak transcription	Fetal Lung	lung
36	chr6:144658600-144661400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:144658600-144661400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:144658600-144662600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:144658600-144662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:144658600-144664000	Weak transcription	Fetal Intestine Small	intestine
41	chr6:144658600-144664000	Weak transcription	Fetal Thymus	thymus
42	chr6:144658800-144661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:144658800-144661800	Weak transcription	Primary T cells from cord blood	blood
44	chr6:144659000-144663000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:144659200-144662600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:144659200-144664800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:144659600-144661800	Enhancers	Fetal Muscle Leg	muscle
48	chr6:144659600-144665200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr6:144659800-144662200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:144659800-144662800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links