Variant report

Variant	rs17464516
Chromosome Location	chr7:26992458-26992459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17464618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17464971	0.81[AFR][1000 genomes]
rs17499833	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17500092	0.85[AFR][1000 genomes]
rs4722649	0.96[AFR][1000 genomes]
rs4722650	0.94[AFR][1000 genomes]
rs4722651	0.89[AFR][1000 genomes]
rs4722652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722653	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6461981	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26985200-26994600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:26989600-26993000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:26991200-26998000	Weak transcription	NHDF-Ad	bronchial
4	chr7:26991400-26992800	Enhancers	Fetal Lung	lung
5	chr7:26991600-26999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:26992000-26994400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:26992200-26994800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:26992400-26992600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:26992400-26992800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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