Variant report

Variant	rs4722649
Chromosome Location	chr7:26942369-26942370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11563293	1.00[AMR][1000 genomes]
rs11563452	1.00[AMR][1000 genomes]
rs11563591	1.00[AMR][1000 genomes]
rs11564061	1.00[AMR][1000 genomes]
rs17154639	1.00[AMR][1000 genomes]
rs17154647	1.00[AMR][1000 genomes]
rs17464516	0.96[AFR][1000 genomes]
rs17464618	0.87[AFR][1000 genomes]
rs17464950	1.00[AMR][1000 genomes]
rs17464971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17465076	1.00[AMR][1000 genomes]
rs17465282	1.00[AMR][1000 genomes]
rs17465309	1.00[AMR][1000 genomes]
rs17499833	0.94[AFR][1000 genomes]
rs17500092	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17500326	1.00[AMR][1000 genomes]
rs17500417	1.00[AMR][1000 genomes]
rs4722650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722652	0.94[AFR][1000 genomes]
rs4722653	0.90[AFR][1000 genomes]
rs6461981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960055	1.00[AMR][1000 genomes]
rs6961068	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26938400-26942400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:26939200-26945400	Weak transcription	Fetal Lung	lung
3	chr7:26942200-26943000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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