Variant report
| Variant | rs17154639 |
|---|---|
| Chromosome Location | chr7:26937207-26937208 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26935848..26940023-chr7:27168844..27171288,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197576 | Chromatin interaction |
| ENSG00000254369 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11563293 | 1.00[AMR][1000 genomes] |
| rs11563452 | 1.00[AMR][1000 genomes] |
| rs11563591 | 1.00[AMR][1000 genomes] |
| rs11564061 | 1.00[AMR][1000 genomes] |
| rs17154647 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17464950 | 1.00[AMR][1000 genomes] |
| rs17464971 | 1.00[AMR][1000 genomes] |
| rs17465076 | 1.00[AMR][1000 genomes] |
| rs17465282 | 1.00[AMR][1000 genomes] |
| rs17465309 | 1.00[AMR][1000 genomes] |
| rs17500092 | 1.00[AMR][1000 genomes] |
| rs17500326 | 1.00[AMR][1000 genomes] |
| rs17500417 | 1.00[AMR][1000 genomes] |
| rs4722649 | 1.00[AMR][1000 genomes] |
| rs4722650 | 1.00[AMR][1000 genomes] |
| rs4722651 | 1.00[AMR][1000 genomes] |
| rs6461981 | 1.00[AMR][1000 genomes] |
| rs6960055 | 1.00[AMR][1000 genomes] |
| rs6961068 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
