Variant report

Variant	rs11563591
Chromosome Location	chr7:27102878-27102879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11563293	1.00[AMR][1000 genomes]
rs11563452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154639	1.00[AMR][1000 genomes]
rs17154647	1.00[AMR][1000 genomes]
rs17464618	0.82[AFR][1000 genomes]
rs17464950	1.00[AMR][1000 genomes]
rs17464971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17465076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17465282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17465309	1.00[AMR][1000 genomes]
rs17500092	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17500326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17500417	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722649	1.00[AMR][1000 genomes]
rs4722650	1.00[AMR][1000 genomes]
rs4722651	1.00[AMR][1000 genomes]
rs6461981	1.00[AMR][1000 genomes]
rs6960055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27102400-27103200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27102800-27105200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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