Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25631774..25634150-chr7:25636240..25639148,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPVF-5	chr7:25632971-25634336	ENSG00000223561.2

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10486407	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10499566	0.81[CEU][hapmap];1.00[MEX][hapmap]
rs1074503	0.92[ASN][1000 genomes]
rs1074504	0.92[ASN][1000 genomes]
rs10951079	0.92[ASN][1000 genomes]
rs11971048	0.92[ASN][1000 genomes]
rs11981833	0.92[ASN][1000 genomes]
rs11981887	0.92[ASN][1000 genomes]
rs11982106	0.92[ASN][1000 genomes]
rs12216588	0.92[ASN][1000 genomes]
rs1502949	0.92[ASN][1000 genomes]
rs1502950	0.92[ASN][1000 genomes]
rs1540332	0.92[ASN][1000 genomes]
rs17367291	0.92[ASN][1000 genomes]
rs17367619	0.80[AMR][1000 genomes]
rs1995437	0.86[AFR][1000 genomes]
rs2074137	0.92[ASN][1000 genomes]
rs2188859	0.80[AMR][1000 genomes]
rs3887045	0.92[ASN][1000 genomes]
rs73693187	0.92[ASN][1000 genomes]
rs739624	0.92[ASN][1000 genomes]
rs882101	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17464658	NPVF	cis	cerebellum	SCAN
rs17464658	TRA2A	cis	cerebellum	SCAN
rs17464658	CDCA7L	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25631600-25634800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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