Variant report

Variant	rs2188859
Chromosome Location	chr7:25660927-25660928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25660475..25663311-chr7:25663363..25666015,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486407	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476082	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17367619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17464658	0.80[AMR][1000 genomes]
rs1995437	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25655200-25664800	Weak transcription	Fetal Kidney	kidney
2	chr7:25655600-25664200	Weak transcription	Right Atrium	heart
3	chr7:25656600-25664200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:25657000-25665000	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:25657400-25664200	Weak transcription	Psoas Muscle	Psoas
6	chr7:25657600-25663600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:25658400-25661600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:25659000-25661400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:25659600-25661400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr7:25659600-25661400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:25659800-25661000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr7:25660200-25661600	Enhancers	Spleen	Spleen
13	chr7:25660200-25661800	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:25660400-25661400	Enhancers	Primary B cells from cord blood	blood
15	chr7:25660400-25661400	Enhancers	Thymus	Thymus
16	chr7:25660400-25662200	Weak transcription	Fetal Lung	lung
17	chr7:25660600-25661000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:25660600-25661200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:25660600-25661600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:25660600-25661600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr7:25660600-25661800	Enhancers	Primary T cells from cord blood	blood
22	chr7:25660600-25664200	Weak transcription	Fetal Stomach	stomach
23	chr7:25660600-25664400	Weak transcription	Adipose Nuclei	Adipose
24	chr7:25660600-25664400	Weak transcription	Aorta	Aorta
25	chr7:25660600-25664800	Weak transcription	Placenta	Placenta
26	chr7:25660800-25661200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:25660800-25661200	Weak transcription	Left Ventricle	heart
28	chr7:25660800-25663800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:25660800-25664200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:25660800-25664400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:25660800-25664800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:25660800-25665000	Weak transcription	Fetal Brain Male	brain
33	chr7:25660800-25665000	Weak transcription	Fetal Thymus	thymus
34	chr7:25660800-25665200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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