Variant report

Variant	rs17467539
Chromosome Location	chr4:10570626-10570627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11938471	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11945398	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11945572	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12233887	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16869808	0.97[ASN][1000 genomes]
rs16869829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16869924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16870163	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870263	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870294	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870613	0.82[JPT][hapmap]
rs16870813	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871047	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17382991	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17467553	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2159246	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2869472	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34445696	0.81[EUR][1000 genomes]
rs3924879	0.85[EUR][1000 genomes]
rs4355385	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4422412	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4479698	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4543106	0.85[EUR][1000 genomes]
rs61759824	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61794273	0.89[EUR][1000 genomes]
rs61794278	0.81[EUR][1000 genomes]
rs61794279	0.81[EUR][1000 genomes]
rs61794845	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61794846	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61794847	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61794848	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61794850	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61794851	0.87[EUR][1000 genomes]
rs61794852	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61794854	0.87[EUR][1000 genomes]
rs61794855	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61794856	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795089	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61795090	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795091	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795092	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795094	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795097	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795098	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795100	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61795101	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795103	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795104	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795105	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795108	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795138	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795139	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795142	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61795143	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795144	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795145	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61795147	0.89[EUR][1000 genomes]
rs61795148	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795150	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795151	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795152	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795154	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795155	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61795157	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61796789	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61796790	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61796791	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61796792	0.93[EUR][1000 genomes]
rs61796794	0.93[EUR][1000 genomes]
rs61796795	0.93[EUR][1000 genomes]
rs61796796	0.89[EUR][1000 genomes]
rs61796797	0.93[EUR][1000 genomes]
rs61796798	0.93[EUR][1000 genomes]
rs61796799	0.89[EUR][1000 genomes]
rs61796800	0.86[EUR][1000 genomes]
rs61796834	0.89[EUR][1000 genomes]
rs61796839	0.89[EUR][1000 genomes]
rs61796841	0.89[EUR][1000 genomes]
rs61796842	0.89[EUR][1000 genomes]
rs61796843	0.89[EUR][1000 genomes]
rs61796846	0.89[EUR][1000 genomes]
rs61796847	0.89[EUR][1000 genomes]
rs6448137	1.00[CHB][hapmap]
rs6821453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6844152	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs763676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7655244	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7673069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7694908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs976149	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
2	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
4	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
5	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
7	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
8	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
9	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
13	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
14	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
15	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv878697	chr4:10501373-10831866	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv878698	chr4:10536544-10632404	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10538400-10578200	Weak transcription	GM12878-XiMat	blood
2	chr4:10554400-10572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:10570400-10571000	Weak transcription	Primary B cells from peripheral blood	blood

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