Variant report

Variant	rs6844152
Chromosome Location	chr4:10678546-10678547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11945572	0.93[EUR][1000 genomes]
rs17382991	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17467539	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs17467553	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2159246	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2869472	1.00[CEU][hapmap]
rs34445696	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3924879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4355385	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4422412	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4479698	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4543106	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61759824	0.93[EUR][1000 genomes]
rs61794273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61794278	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61794279	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61794845	0.96[EUR][1000 genomes]
rs61794846	0.89[EUR][1000 genomes]
rs61794847	0.96[EUR][1000 genomes]
rs61794848	0.91[EUR][1000 genomes]
rs61794850	0.89[EUR][1000 genomes]
rs61794851	0.89[EUR][1000 genomes]
rs61794852	0.89[EUR][1000 genomes]
rs61794854	0.90[EUR][1000 genomes]
rs61794855	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61794856	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61795089	0.91[EUR][1000 genomes]
rs61795090	0.91[EUR][1000 genomes]
rs61795091	0.91[EUR][1000 genomes]
rs61795092	0.91[EUR][1000 genomes]
rs61795094	0.91[EUR][1000 genomes]
rs61795097	0.93[EUR][1000 genomes]
rs61795098	0.91[EUR][1000 genomes]
rs61795100	0.93[EUR][1000 genomes]
rs61795101	0.93[EUR][1000 genomes]
rs61795103	0.93[EUR][1000 genomes]
rs61795104	0.93[EUR][1000 genomes]
rs61795105	0.93[EUR][1000 genomes]
rs61795108	0.93[EUR][1000 genomes]
rs61795138	0.93[EUR][1000 genomes]
rs61795139	0.93[EUR][1000 genomes]
rs61795142	0.87[EUR][1000 genomes]
rs61795143	0.93[EUR][1000 genomes]
rs61795144	0.93[EUR][1000 genomes]
rs61795145	0.93[EUR][1000 genomes]
rs61795147	0.91[EUR][1000 genomes]
rs61795148	0.96[EUR][1000 genomes]
rs61795149	0.81[EUR][1000 genomes]
rs61795150	0.96[EUR][1000 genomes]
rs61795151	0.96[EUR][1000 genomes]
rs61795152	0.96[EUR][1000 genomes]
rs61795154	0.96[EUR][1000 genomes]
rs61795155	0.96[EUR][1000 genomes]
rs61795157	0.96[EUR][1000 genomes]
rs61796789	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796790	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796791	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796792	0.96[EUR][1000 genomes]
rs61796794	0.96[EUR][1000 genomes]
rs61796795	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796796	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61796797	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796798	0.96[EUR][1000 genomes]
rs61796799	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61796800	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61796834	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61796839	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61796841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655244	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs7685040	0.85[CEU][hapmap]
rs976149	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
5	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
7	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
8	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
9	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
10	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv878697	chr4:10501373-10831866	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv829860	chr4:10598743-10764854	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10677000-10679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:10677400-10678800	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:10677400-10679800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:10677800-10679200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:10678000-10678800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:10678200-10679400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr4:10678200-10679800	ZNF genes & repeats	GM12878-XiMat	blood

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