Variant report

Variant	rs17468155
Chromosome Location	chr15:49182605-49182606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:49180817..49182806-chr15:49189044..49191757,2	MCF-7	breast:
2	chr15:49177358..49179860-chr15:49182276..49184496,2	K562	blood:
3	chr15:49181810..49184656-chr15:49337105..49339027,2	K562	blood:
4	chr15:49179674..49183079-chr15:49187597..49191697,5	K562	blood:
5	chr15:49172156..49176892-chr15:49181644..49185949,6	K562	blood:
6	chr15:49175113..49177335-chr15:49181644..49184684,4	K562	blood:
7	chr15:49168924..49171705-chr15:49181627..49183755,3	K562	blood:
8	chr15:49182281..49184447-chr15:49184915..49187118,2	MCF-7	breast:
9	chr15:49170205..49175036-chr15:49181699..49185949,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255302	Chromatin interaction
ENSG00000235883	Chromatin interaction
ENSG00000185634	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17383671	0.87[MKK][hapmap]
rs17466389	0.87[MKK][hapmap]
rs62009458	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49171000-49185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:49172600-49183400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:49172600-49189000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:49176400-49188000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:49179000-49183600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:49179600-49183000	Weak transcription	A549	lung
7	chr15:49179600-49187200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:49180400-49183600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:49180800-49182800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:49180800-49183800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:49181600-49189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:49181800-49188800	Weak transcription	HMEC	breast
13	chr15:49181800-49188800	Weak transcription	NHLF	lung
14	chr15:49181800-49189000	Weak transcription	Fetal Stomach	stomach
15	chr15:49182000-49188800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:49182200-49184000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:49182600-49183200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:49182600-49183200	Flanking Active TSS	K562	blood
19	chr15:49182600-49183200	Enhancers	NHDF-Ad	bronchial
20	chr15:49182600-49183600	Enhancers	Osteobl	bone
21	chr15:49182600-49183800	Enhancers	Fetal Kidney	kidney

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