Variant report

Variant rs17472021
Chromosome Location chr7:27181452-27181453
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27175800-27184800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
2 chr7:27177600-27183200 Active TSS Rectal Mucosa Donor 29 rectum
3 chr7:27177600-27184400 Active TSS Duodenum Smooth Muscle Duodenum
4 chr7:27177800-27181800 Flanking Active TSS HUVEC blood vessel
5 chr7:27178600-27183000 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
6 chr7:27179000-27183400 Active TSS Lung lung
7 chr7:27179200-27182200 Weak transcription Spleen Spleen
8 chr7:27179200-27183200 Weak transcription Dnd41 blood
9 chr7:27179400-27181800 Strong transcription Muscle Satellite Cultured Cells --
10 chr7:27179400-27183200 Transcr. at gene 5' and 3' Fetal Lung lung
11 chr7:27179600-27181600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr7:27179600-27181600 Transcr. at gene 5' and 3' Fetal Kidney kidney
13 chr7:27180000-27181600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr7:27180000-27181600 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr7:27180000-27183600 Active TSS Stomach Smooth Muscle stomach
16 chr7:27180200-27181800 Genic enhancers Primary hematopoietic stem cells short term culture blood
17 chr7:27180400-27181600 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr7:27180400-27182200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr7:27180600-27183000 Active TSS Rectal Smooth Muscle rectum
20 chr7:27180600-27183600 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr7:27180600-27185600 Active TSS Breast Myoepithelial Primary Cells Breast
22 chr7:27180800-27181600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr7:27180800-27181600 Flanking Active TSS Rectal Mucosa Donor 31 rectum
24 chr7:27180800-27181600 Flanking Active TSS NHEK skin
25 chr7:27180800-27181800 Flanking Active TSS Adipose Nuclei Adipose
26 chr7:27180800-27181800 Bivalent/Poised TSS Fetal Brain Male brain
27 chr7:27180800-27183600 Bivalent/Poised TSS Duodenum Mucosa Duodenum
28 chr7:27181000-27181600 Weak transcription Primary hematopoietic stem cells blood
29 chr7:27181000-27181600 Transcr. at gene 5' and 3' Colon Smooth Muscle Colon
30 chr7:27181000-27181600 Bivalent/Poised TSS Pancreatic Islets Pancreatic Islet
31 chr7:27181000-27181600 Active TSS Fetal Stomach stomach
32 chr7:27181000-27182200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr7:27181200-27181600 Transcr. at gene 5' and 3' NHLF lung
34 chr7:27181200-27181800 Transcr. at gene 5' and 3' Fetal Muscle Leg muscle
35 chr7:27181200-27182800 Weak transcription NHDF-Ad bronchial
36 chr7:27181200-27183600 Active TSS HMEC breast
37 chr7:27181200-27184000 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
38 chr7:27181400-27181600 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
39 chr7:27181400-27181600 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
40 chr7:27181400-27181600 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin02 Skin
41 chr7:27181400-27181600 Transcr. at gene 5' and 3' Fetal Intestine Large intestine
42 chr7:27181400-27181600 Enhancers Sigmoid Colon Sigmoid Colon
43 chr7:27181400-27181600 Enhancers Hela-S3 cervix
44 chr7:27181400-27181600 Flanking Active TSS HepG2 liver
45 chr7:27181400-27181600 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
46 chr7:27181400-27181600 Transcr. at gene 5' and 3' Osteobl bone
47 chr7:27181400-27181800 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
48 chr7:27181400-27182000 Active TSS Fetal Adrenal Gland Adrenal Gland
49 chr7:27181400-27182000 Genic enhancers Skeletal Muscle Male skeletal muscle
50 chr7:27181400-27182600 Bivalent Enhancer Ganglion Eminence derived primary cultured neurospheres brain

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