Variant report

Variant	rs17476476
Chromosome Location	chr8:119039774-119039775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119039290..119041869-chr8:119044899..119048314,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17453861	1.00[YRI][hapmap]
rs17476387	1.00[YRI][hapmap]
rs17505192	1.00[YRI][hapmap]
rs17505276	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119030000-119040600	Enhancers	Fetal Intestine Small	intestine
2	chr8:119032400-119043200	Weak transcription	GM12878-XiMat	blood
3	chr8:119033200-119040200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:119035000-119040000	Enhancers	NHDF-Ad	bronchial
5	chr8:119035000-119040200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:119035000-119044600	Enhancers	Liver	Liver
7	chr8:119035200-119040400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:119035400-119040600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:119035600-119040600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr8:119035600-119040800	Enhancers	Small Intestine	intestine
11	chr8:119035600-119044200	Enhancers	HepG2	liver
12	chr8:119035800-119040000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:119035800-119040400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:119035800-119040400	Enhancers	Fetal Lung	lung
15	chr8:119036000-119040000	Enhancers	Fetal Muscle Leg	muscle
16	chr8:119036000-119040200	Enhancers	Aorta	Aorta
17	chr8:119036000-119040600	Enhancers	Right Ventricle	heart
18	chr8:119036200-119040200	Enhancers	Hela-S3	cervix
19	chr8:119036400-119042800	Weak transcription	Esophagus	oesophagus
20	chr8:119036600-119046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:119037000-119040200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:119037000-119040600	Enhancers	Left Ventricle	heart
23	chr8:119037000-119040600	Enhancers	Stomach Mucosa	stomach
24	chr8:119037200-119046600	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:119037400-119040600	Enhancers	Fetal Intestine Large	intestine
26	chr8:119037400-119040600	Enhancers	Right Atrium	heart
27	chr8:119037400-119040800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:119037400-119040800	Enhancers	Pancreas	Pancrea
29	chr8:119037400-119041800	Weak transcription	Brain Angular Gyrus	brain
30	chr8:119037600-119040600	Enhancers	Gastric	stomach
31	chr8:119037600-119043200	Weak transcription	Fetal Brain Male	brain
32	chr8:119037600-119046600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr8:119037600-119046600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:119037800-119040400	Enhancers	Fetal Heart	heart
35	chr8:119037800-119040600	Enhancers	Colonic Mucosa	Colon
36	chr8:119037800-119040600	Enhancers	Ovary	ovary
37	chr8:119038000-119040000	Enhancers	Stomach Smooth Muscle	stomach
38	chr8:119038000-119040800	Enhancers	A549	lung
39	chr8:119038200-119041600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:119038200-119042000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:119038200-119043200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:119038200-119046600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:119038400-119041600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:119038400-119041600	Weak transcription	Fetal Stomach	stomach
45	chr8:119038400-119041600	Weak transcription	HSMMtube	muscle
46	chr8:119038400-119041800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr8:119038400-119042000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:119038400-119042000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:119038400-119042400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr8:119038400-119043000	Weak transcription	Placenta	Placenta

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