Variant report

Variant	rs17505192
Chromosome Location	chr8:119023211-119023212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119022743..119025680-chr8:119028143..119030470,3	MCF-7	breast:
2	chr8:118999516..119001908-chr8:119020694..119023645,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17453861	1.00[YRI][hapmap]
rs17476387	1.00[YRI][hapmap]
rs17476476	1.00[YRI][hapmap]
rs17505276	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118994000-119031000	Weak transcription	Primary T cells from cord blood	blood
2	chr8:119013200-119030000	Weak transcription	Colonic Mucosa	Colon
3	chr8:119016200-119026000	Enhancers	Liver	Liver
4	chr8:119018000-119033200	Weak transcription	Spleen	Spleen
5	chr8:119020000-119023800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:119020000-119024800	Enhancers	Adipose Nuclei	Adipose
7	chr8:119020000-119025600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:119020200-119023600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:119020200-119025200	Enhancers	Left Ventricle	heart
10	chr8:119020200-119026000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:119020400-119024600	Enhancers	Right Ventricle	heart
12	chr8:119020600-119025200	Enhancers	Fetal Heart	heart
13	chr8:119020600-119025400	Enhancers	HSMM	muscle
14	chr8:119020600-119025600	Enhancers	Right Atrium	heart
15	chr8:119020800-119024800	Enhancers	Fetal Lung	lung
16	chr8:119021000-119023400	Enhancers	HUVEC	blood vessel
17	chr8:119021000-119024800	Enhancers	HSMMtube	muscle
18	chr8:119021000-119026000	Enhancers	Hela-S3	cervix
19	chr8:119021200-119024800	Enhancers	Psoas Muscle	Psoas
20	chr8:119021200-119025600	Enhancers	Ovary	ovary
21	chr8:119021200-119028000	Enhancers	HMEC	breast
22	chr8:119021600-119024800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr8:119021600-119028600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:119021600-119030200	Weak transcription	Brain Germinal Matrix	brain
25	chr8:119021800-119023400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:119021800-119023800	Enhancers	Lung	lung
27	chr8:119021800-119024400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:119021800-119024800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:119021800-119027800	Weak transcription	Brain Anterior Caudate	brain
30	chr8:119021800-119029600	Weak transcription	Fetal Intestine Large	intestine
31	chr8:119021800-119036000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:119022000-119023400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:119022000-119023600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:119022000-119023800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:119022000-119024000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr8:119022000-119024000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr8:119022000-119024200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:119022000-119024600	Weak transcription	Pancreas	Pancrea
39	chr8:119022000-119025400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr8:119022000-119030000	Weak transcription	Fetal Intestine Small	intestine
41	chr8:119022000-119030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:119022200-119023400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:119022200-119024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:119022200-119028000	Weak transcription	Esophagus	oesophagus
45	chr8:119022400-119025600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr8:119022600-119025000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr8:119022600-119025000	Enhancers	Fetal Muscle Leg	muscle
48	chr8:119022600-119025200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr8:119022600-119025200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr8:119022600-119026000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links