Variant report

Variant	rs17478241
Chromosome Location	chr14:32617020-32617021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61427077	0.86[AFR][1000 genomes]
rs7151991	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7152756	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7153052	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73268969	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8004917	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9332386	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv983949	chr14:32604484-32618641	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32577400-32625000	Weak transcription	Small Intestine	intestine
2	chr14:32590000-32623000	Weak transcription	HSMMtube	muscle
3	chr14:32591600-32621200	Weak transcription	NHLF	lung
4	chr14:32596000-32622800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:32596400-32620400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:32597800-32619600	Weak transcription	Esophagus	oesophagus
7	chr14:32598000-32618400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:32598000-32629000	Weak transcription	Gastric	stomach
9	chr14:32599200-32619600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:32599200-32623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:32600400-32623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:32601600-32626800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:32602200-32619600	Weak transcription	K562	blood
14	chr14:32603600-32630400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:32604000-32626200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:32604400-32626200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:32605800-32625400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:32606800-32619800	Weak transcription	Brain Angular Gyrus	brain
19	chr14:32607000-32623400	Weak transcription	Psoas Muscle	Psoas
20	chr14:32607600-32623200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:32607800-32618400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:32607800-32620800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:32607800-32623800	Weak transcription	Colonic Mucosa	Colon
24	chr14:32607800-32625000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:32607800-32625600	Weak transcription	Lung	lung
26	chr14:32608600-32619400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:32609400-32619400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:32609400-32619400	Weak transcription	NH-A	brain
29	chr14:32609800-32627600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:32610400-32635000	Weak transcription	GM12878-XiMat	blood
31	chr14:32611000-32619200	Weak transcription	Primary B cells from cord blood	blood
32	chr14:32611400-32617400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:32611600-32617400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:32611600-32621400	Strong transcription	Fetal Muscle Leg	muscle
35	chr14:32611600-32626800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:32611800-32631600	Weak transcription	Aorta	Aorta
37	chr14:32612000-32619600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:32612000-32619600	Weak transcription	HUVEC	blood vessel
39	chr14:32612000-32622400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:32612000-32624800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:32612000-32626200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:32612000-32627600	Weak transcription	Fetal Brain Male	brain
43	chr14:32612200-32618200	Weak transcription	A549	lung
44	chr14:32612200-32622800	Weak transcription	Fetal Brain Female	brain
45	chr14:32612200-32623400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:32612400-32619400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr14:32612400-32625600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:32612800-32619800	Weak transcription	Brain Germinal Matrix	brain
49	chr14:32613000-32626800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:32613200-32618600	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links