Variant report

Variant	rs61427077
Chromosome Location	chr14:32604769-32604770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32602399..32605082-chr14:32670593..32672756,2	MCF-7	breast:
2	chr14:32555055..32558113-chr14:32603507..32605288,3	MCF-7	breast:
3	chr14:32564399..32566977-chr14:32602689..32605048,2	MCF-7	breast:
4	chr14:32543954..32548342-chr14:32602314..32606365,7	MCF-7	breast:
5	chr14:32597351..32599387-chr14:32602127..32605349,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201654	Chromatin interaction
ENSG00000202337	Chromatin interaction
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17478241	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv983949	chr14:32604484-32618641	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32571800-32606800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:32571800-32614400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:32574400-32615600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:32577200-32605400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:32577400-32625000	Weak transcription	Small Intestine	intestine
6	chr14:32590000-32623000	Weak transcription	HSMMtube	muscle
7	chr14:32591600-32621200	Weak transcription	NHLF	lung
8	chr14:32592200-32606400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:32592800-32614400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32593600-32606400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:32593800-32607200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:32595800-32605600	Weak transcription	Primary B cells from cord blood	blood
13	chr14:32595800-32605600	Weak transcription	Fetal Lung	lung
14	chr14:32595800-32605800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:32596000-32605600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:32596000-32606600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:32596000-32622800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:32596200-32605400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:32596200-32605800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:32596400-32620400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:32596600-32616200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:32597600-32606400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:32597800-32605200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:32597800-32607200	Weak transcription	Ovary	ovary
25	chr14:32597800-32607400	Weak transcription	Lung	lung
26	chr14:32597800-32616600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:32597800-32619600	Weak transcription	Esophagus	oesophagus
28	chr14:32598000-32605800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:32598000-32606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:32598000-32606800	Weak transcription	Fetal Thymus	thymus
31	chr14:32598000-32614200	Weak transcription	Pancreas	Pancrea
32	chr14:32598000-32618400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:32598000-32629000	Weak transcription	Gastric	stomach
34	chr14:32598800-32605400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:32598800-32605600	Weak transcription	Adipose Nuclei	Adipose
36	chr14:32599000-32605800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr14:32599000-32606400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:32599000-32607400	Weak transcription	Brain Anterior Caudate	brain
39	chr14:32599200-32605600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:32599200-32605800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:32599200-32605800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:32599200-32605800	Weak transcription	HSMM	muscle
43	chr14:32599200-32606400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:32599200-32606800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:32599200-32615200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:32599200-32619600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr14:32599200-32623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:32599600-32605200	Weak transcription	HepG2	liver
49	chr14:32600200-32604800	Weak transcription	Fetal Muscle Leg	muscle
50	chr14:32600200-32604800	Weak transcription	Left Ventricle	heart

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