Variant report

Variant	rs17478963
Chromosome Location	chr6:15871999-15872000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15861714..15863237-chr6:15871129..15873974,2	K562	blood:
2	chr6:15869215..15876030-chr6:16126980..16132874,9	K562	blood:
3	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:
4	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
5	chr6:15870383..15873187-chr6:16133661..16135212,2	K562	blood:
6	chr6:15870044..15875331-chr6:16125513..16132572,8	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10484351	0.85[TSI][hapmap]
rs10484352	0.81[EUR][1000 genomes]
rs17418707	1.00[GIH][hapmap];0.91[TSI][hapmap]
rs17419263	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34459959	0.81[EUR][1000 genomes]
rs35387263	0.84[EUR][1000 genomes]
rs41499644	0.81[EUR][1000 genomes]
rs4716005	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55715119	0.81[EUR][1000 genomes]
rs55756972	0.81[EUR][1000 genomes]
rs56207716	0.81[EUR][1000 genomes]
rs6459432	0.82[MEX][hapmap]
rs7748171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs881017	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17478963	ID4	cis	cerebellum	SCAN
rs17478963	ID4	cis	parietal	SCAN
rs17478963	MYLIP	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15863400-15872600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:15869200-15872800	Weak transcription	K562	blood
3	chr6:15870000-15873200	Enhancers	HUVEC	blood vessel
4	chr6:15870200-15873200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:15870400-15872800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:15870600-15873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15870600-15873800	Enhancers	NHDF-Ad	bronchial
8	chr6:15870600-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15870800-15872200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:15870800-15872400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15871000-15872200	Enhancers	Fetal Intestine Small	intestine
13	chr6:15871000-15873200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:15871000-15873200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:15871000-15875600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:15871200-15872200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:15871200-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:15871400-15872000	Enhancers	Duodenum Mucosa	Duodenum
19	chr6:15871400-15873400	Enhancers	NHLF	lung
20	chr6:15871600-15872000	Enhancers	Fetal Intestine Large	intestine
21	chr6:15871600-15872000	Enhancers	Pancreas	Pancrea
22	chr6:15871600-15872400	Weak transcription	Adipose Nuclei	Adipose
23	chr6:15871600-15872400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:15871600-15873200	Enhancers	Fetal Kidney	kidney
25	chr6:15871600-15873600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:15871600-15873800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:15871600-15875000	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:15871800-15872000	Weak transcription	Left Ventricle	heart
29	chr6:15871800-15872400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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