Variant report

Variant	rs10484351
Chromosome Location	chr6:15843042-15843043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15838685..15840880-chr6:15842392..15845284,2	K562	blood:
2	chr6:15842370..15845116-chr6:16129006..16131584,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484352	0.95[EUR][1000 genomes]
rs13190874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203015	1.00[ASN][1000 genomes]
rs13211010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220668	0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16877105	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418707	0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs17419263	0.81[EUR][1000 genomes]
rs17419416	1.00[JPT][hapmap]
rs17478963	0.85[TSI][hapmap]
rs1927587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057168	1.00[ASN][1000 genomes]
rs34459959	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34486559	1.00[ASN][1000 genomes]
rs34837879	0.97[ASN][1000 genomes]
rs35057201	1.00[ASN][1000 genomes]
rs35387263	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35446927	1.00[ASN][1000 genomes]
rs35511116	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563909	0.98[ASN][1000 genomes]
rs41499644	0.95[EUR][1000 genomes]
rs4712259	0.92[EUR][1000 genomes]
rs4712260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712261	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716000	0.93[EUR][1000 genomes]
rs4716002	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716003	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4989041	0.93[EUR][1000 genomes]
rs55715119	0.95[EUR][1000 genomes]
rs55756972	0.95[EUR][1000 genomes]
rs56207716	0.95[EUR][1000 genomes]
rs56213114	0.87[ASN][1000 genomes]
rs56314144	0.93[EUR][1000 genomes]
rs67428710	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71554545	1.00[ASN][1000 genomes]
rs73366628	0.96[EUR][1000 genomes]
rs7745776	0.93[EUR][1000 genomes]
rs7749868	0.93[EUR][1000 genomes]
rs7750026	0.93[EUR][1000 genomes]
rs9358074	0.88[JPT][hapmap]
rs9370839	0.86[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10484351	MYLIP	cis	cerebellum	SCAN
rs10484351	ID4	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15837600-15843800	Weak transcription	K562	blood
2	chr6:15840600-15844000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:15840600-15845200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:15841000-15845400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:15841200-15845600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:15841600-15844600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15842000-15843200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:15842200-15843200	Enhancers	Brain Hippocampus Middle	brain
9	chr6:15842200-15843600	Enhancers	Fetal Muscle Leg	muscle
10	chr6:15842600-15844000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:15842600-15844400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:15842600-15846000	Enhancers	Ovary	ovary
13	chr6:15842800-15843200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:15842800-15843200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:15842800-15843200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:15842800-15843200	Enhancers	Aorta	Aorta
17	chr6:15842800-15843200	Enhancers	Right Atrium	heart
18	chr6:15842800-15843600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:15842800-15844000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:15842800-15845800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:15843000-15843600	Enhancers	Adipose Nuclei	Adipose
22	chr6:15843000-15843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:15843000-15844000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:15843000-15844200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:15843000-15844400	Weak transcription	Fetal Brain Male	brain
26	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links