Variant report

Variant	rs1927587
Chromosome Location	chr6:15845108-15845109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15838685..15840880-chr6:15842392..15845284,2	K562	blood:
2	chr6:15842370..15845116-chr6:16129006..16131584,2	K562	blood:
3	chr6:15843460..15845659-chr6:15846295..15848872,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484352	0.95[EUR][1000 genomes]
rs13190874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203015	1.00[ASN][1000 genomes]
rs13211010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220668	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16877105	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418707	0.93[EUR][1000 genomes]
rs17419263	0.81[EUR][1000 genomes]
rs17419416	1.00[JPT][hapmap]
rs34057168	1.00[ASN][1000 genomes]
rs34459959	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34486559	1.00[ASN][1000 genomes]
rs34837879	0.97[ASN][1000 genomes]
rs35057201	1.00[ASN][1000 genomes]
rs35387263	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35446927	1.00[ASN][1000 genomes]
rs35511116	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563909	0.98[ASN][1000 genomes]
rs41499644	0.95[EUR][1000 genomes]
rs4712259	0.92[EUR][1000 genomes]
rs4712260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712261	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716000	0.93[EUR][1000 genomes]
rs4716002	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716003	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4989041	0.93[EUR][1000 genomes]
rs55715119	0.95[EUR][1000 genomes]
rs55756972	0.95[EUR][1000 genomes]
rs56207716	0.95[EUR][1000 genomes]
rs56213114	0.87[ASN][1000 genomes]
rs56314144	0.93[EUR][1000 genomes]
rs67428710	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71554545	1.00[ASN][1000 genomes]
rs73366628	0.96[EUR][1000 genomes]
rs7745776	0.93[EUR][1000 genomes]
rs7749868	0.93[EUR][1000 genomes]
rs7750026	0.93[EUR][1000 genomes]
rs9358074	0.88[JPT][hapmap]
rs9370839	0.88[JPT][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15840600-15845200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:15841000-15845400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:15841200-15845600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:15842600-15846000	Enhancers	Ovary	ovary
5	chr6:15842800-15845800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:15843800-15849400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:15844000-15845200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:15844000-15846200	Enhancers	GM12878-XiMat	blood
10	chr6:15844200-15849400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:15844600-15845200	Weak transcription	Fetal Brain Male	brain
12	chr6:15844600-15845800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:15844600-15845800	Weak transcription	K562	blood

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