Variant report

Variant	rs67428710
Chromosome Location	chr6:15848069-15848070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15847033..15849946-chr6:16004601..16006275,2	K562	blood:
2	chr6:15843460..15845659-chr6:15846295..15848872,3	K562	blood:
3	chr6:15847371..15849315-chr6:15851002..15853274,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10484350	0.82[ASN][1000 genomes]
rs10484351	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484352	0.92[EUR][1000 genomes]
rs11751345	0.85[ASN][1000 genomes]
rs13190874	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13190914	0.82[ASN][1000 genomes]
rs13203015	0.93[ASN][1000 genomes]
rs13211010	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13218971	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13220668	0.94[ASN][1000 genomes]
rs16877105	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16877108	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16877113	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17418707	0.91[EUR][1000 genomes]
rs17419263	0.83[EUR][1000 genomes]
rs17419416	0.84[ASN][1000 genomes]
rs1927587	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34057168	0.93[ASN][1000 genomes]
rs34301608	0.82[ASN][1000 genomes]
rs34459959	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34486559	0.93[ASN][1000 genomes]
rs34837879	0.90[ASN][1000 genomes]
rs35057201	0.93[ASN][1000 genomes]
rs35387263	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35446927	0.93[ASN][1000 genomes]
rs35511116	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35563909	0.92[ASN][1000 genomes]
rs35734382	0.82[ASN][1000 genomes]
rs41499644	0.92[EUR][1000 genomes]
rs4712259	0.90[EUR][1000 genomes]
rs4712260	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712261	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4716000	0.91[EUR][1000 genomes]
rs4716002	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4716003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716005	0.82[EUR][1000 genomes]
rs4989041	0.91[EUR][1000 genomes]
rs55715119	0.92[EUR][1000 genomes]
rs55756972	0.92[EUR][1000 genomes]
rs56207716	0.92[EUR][1000 genomes]
rs56213114	0.94[ASN][1000 genomes]
rs56314144	0.91[EUR][1000 genomes]
rs71554545	0.93[ASN][1000 genomes]
rs73366628	0.93[EUR][1000 genomes]
rs7745776	0.91[EUR][1000 genomes]
rs7749868	0.91[EUR][1000 genomes]
rs7750026	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970078	chr6:15846040-15849636	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:15843800-15849400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15844200-15849400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links