Variant report

Variant	rs13220668
Chromosome Location	chr6:15852607-15852608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15851159..15853567-chr6:15909495..15911711,2	K562	blood:
2	chr6:15850587..15852774-chr6:16127746..16130756,3	MCF-7	breast:
3	chr6:15847371..15849315-chr6:15851002..15853274,2	K562	blood:
4	chr6:15851968..15854931-chr6:16143231..16145085,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484350	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10484351	0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11751345	0.92[ASN][1000 genomes]
rs11966220	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13190874	0.87[ASN][1000 genomes]
rs13190914	0.89[ASN][1000 genomes]
rs13203015	0.87[ASN][1000 genomes]
rs13208062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13211010	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13214084	1.00[EUR][1000 genomes]
rs13218971	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16877105	0.87[ASN][1000 genomes]
rs16877108	0.87[ASN][1000 genomes]
rs16877113	0.87[ASN][1000 genomes]
rs17419416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1927587	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28860300	1.00[EUR][1000 genomes]
rs34057168	0.87[ASN][1000 genomes]
rs34126499	1.00[EUR][1000 genomes]
rs34301608	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34459959	0.90[ASN][1000 genomes]
rs34486559	0.87[ASN][1000 genomes]
rs34545176	1.00[EUR][1000 genomes]
rs34837879	0.84[ASN][1000 genomes]
rs35057201	0.87[ASN][1000 genomes]
rs35387263	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35446927	0.87[ASN][1000 genomes]
rs35511116	0.87[ASN][1000 genomes]
rs35563909	0.86[ASN][1000 genomes]
rs35734382	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4712260	0.87[ASN][1000 genomes]
rs4712261	0.87[ASN][1000 genomes]
rs4712266	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4716002	0.87[ASN][1000 genomes]
rs4716003	0.92[ASN][1000 genomes]
rs56213114	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67428710	0.94[ASN][1000 genomes]
rs707840	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs71554545	0.87[ASN][1000 genomes]
rs9349990	1.00[EUR][1000 genomes]
rs9358074	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs9370839	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9370841	0.81[ASN][1000 genomes]
rs9370848	1.00[EUR][1000 genomes]
rs9383091	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9383093	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9383094	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9396616	1.00[CEU][hapmap]
rs9396617	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:15850600-15855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:15850800-15855400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15850800-15855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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