Variant report

Variant	rs34126499
Chromosome Location	chr6:15923198-15923199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15921346..15923754-chr6:15927651..15930259,4	K562	blood:
2	chr6:15922948..15926543-chr6:16128347..16132310,5	K562	blood:
3	chr6:15882525..15884862-chr6:15922870..15925036,2	K562	blood:
4	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
5	chr6:15921762..15925061-chr6:15925136..15927911,3	MCF-7	breast:
6	chr6:15921188..15923824-chr6:16129330..16131247,3	MCF-7	breast:
7	chr6:15909137..15912614-chr6:15921343..15924377,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11966220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202586	0.83[ASN][1000 genomes]
rs13208062	1.00[EUR][1000 genomes]
rs13214084	1.00[EUR][1000 genomes]
rs13220668	1.00[EUR][1000 genomes]
rs2096212	0.93[ASN][1000 genomes]
rs28860300	1.00[EUR][1000 genomes]
rs34301608	1.00[EUR][1000 genomes]
rs34545176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35514893	0.83[AMR][1000 genomes]
rs35734382	1.00[EUR][1000 genomes]
rs4712266	0.91[ASN][1000 genomes]
rs707840	1.00[EUR][1000 genomes]
rs9349990	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370841	0.83[AMR][1000 genomes]
rs9370843	0.83[AMR][1000 genomes]
rs9370848	1.00[EUR][1000 genomes]
rs9383090	1.00[ASN][1000 genomes]
rs9383091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383093	1.00[EUR][1000 genomes]
rs9383094	1.00[EUR][1000 genomes]
rs9396615	0.83[AMR][1000 genomes]
rs9396616	1.00[ASN][1000 genomes]
rs9396617	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15920200-15924600	Enhancers	Placenta	Placenta
2	chr6:15921400-15924000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15921600-15924200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:15921600-15924400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15921600-15927600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:15921600-15929400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:15922000-15923200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15922000-15924200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:15922000-15924400	Enhancers	HUVEC	blood vessel
10	chr6:15922000-15926600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:15922200-15923800	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:15922200-15924400	Enhancers	K562	blood
13	chr6:15922400-15923600	Enhancers	Fetal Stomach	stomach
14	chr6:15922400-15923800	Enhancers	NHDF-Ad	bronchial
15	chr6:15922600-15923200	Enhancers	Colon Smooth Muscle	Colon
16	chr6:15922600-15923400	Enhancers	Fetal Heart	heart
17	chr6:15922600-15923600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:15922600-15923600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:15922600-15924000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:15922600-15925200	Enhancers	Fetal Muscle Leg	muscle
21	chr6:15922800-15923200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:15922800-15923400	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:15923000-15923400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links