Variant report

Variant	rs9396616
Chromosome Location	chr6:15922483-15922484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15921346..15923754-chr6:15927651..15930259,4	K562	blood:
2	chr6:15910080..15912614-chr6:15921343..15923025,2	K562	blood:
3	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
4	chr6:15903215..15905217-chr6:15920542..15922954,2	K562	blood:
5	chr6:15921762..15925061-chr6:15925136..15927911,3	MCF-7	breast:
6	chr6:15920508..15922893-chr6:16129183..16131823,3	K562	blood:
7	chr6:15921188..15923824-chr6:16129330..16131247,3	MCF-7	breast:
8	chr6:15920045..15922599-chr6:15930327..15932865,2	K562	blood:
9	chr6:15909137..15912614-chr6:15921343..15924377,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11966220	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[ASN][1000 genomes]
rs13202586	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13208062	1.00[CEU][hapmap]
rs13220668	1.00[CEU][hapmap]
rs2096212	0.93[ASN][1000 genomes]
rs34126499	1.00[ASN][1000 genomes]
rs34545176	1.00[ASN][1000 genomes]
rs4712266	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs707840	1.00[CEU][hapmap]
rs9349990	0.93[ASN][1000 genomes]
rs9358074	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9370839	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9383090	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383091	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[ASN][1000 genomes]
rs9383093	1.00[CEU][hapmap]
rs9396617	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15920200-15924600	Enhancers	Placenta	Placenta
2	chr6:15921400-15924000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15921600-15924200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:15921600-15924400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15921600-15927600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:15921600-15929400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:15922000-15923200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15922000-15924200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:15922000-15924400	Enhancers	HUVEC	blood vessel
10	chr6:15922000-15926600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:15922200-15922800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:15922200-15923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:15922200-15923800	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:15922200-15924400	Enhancers	K562	blood
15	chr6:15922400-15923600	Enhancers	Fetal Stomach	stomach
16	chr6:15922400-15923800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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