Variant report

Variant	rs13218971
Chromosome Location	chr6:15830901-15830902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15829716..15831885-chr6:16127780..16130244,2	K562	blood:
2	chr6:15816794..15818788-chr6:15829882..15831801,2	K562	blood:
3	chr6:15822836..15825669-chr6:15827542..15830932,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484352	0.95[EUR][1000 genomes]
rs13190874	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203015	1.00[ASN][1000 genomes]
rs13211010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220668	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16877105	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877108	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877113	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418707	0.93[EUR][1000 genomes]
rs17419263	0.81[EUR][1000 genomes]
rs17419416	1.00[JPT][hapmap]
rs1927587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057168	1.00[ASN][1000 genomes]
rs34459959	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34486559	1.00[ASN][1000 genomes]
rs34837879	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35057201	1.00[ASN][1000 genomes]
rs35387263	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35446927	1.00[ASN][1000 genomes]
rs35511116	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563909	0.98[ASN][1000 genomes]
rs41465249	0.81[EUR][1000 genomes]
rs41499644	0.95[EUR][1000 genomes]
rs4712259	0.92[EUR][1000 genomes]
rs4712260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712261	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716000	0.93[EUR][1000 genomes]
rs4716002	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716003	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4989041	0.93[EUR][1000 genomes]
rs55715119	0.95[EUR][1000 genomes]
rs55756972	0.95[EUR][1000 genomes]
rs56207716	0.95[EUR][1000 genomes]
rs56213114	0.87[ASN][1000 genomes]
rs56314144	0.93[EUR][1000 genomes]
rs67428710	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71554545	1.00[ASN][1000 genomes]
rs73366628	0.93[EUR][1000 genomes]
rs7745776	0.93[EUR][1000 genomes]
rs7749868	0.93[EUR][1000 genomes]
rs7750026	0.93[EUR][1000 genomes]
rs9358074	0.88[JPT][hapmap]
rs9370839	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970653	chr6:15826001-15833990	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15825800-15842800	Weak transcription	Right Atrium	heart

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