Variant report

Variant	rs7749868
Chromosome Location	chr6:15829754-15829755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15829716..15831885-chr6:16127780..16130244,2	K562	blood:
2	chr6:15822836..15825669-chr6:15827542..15830932,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484351	0.93[EUR][1000 genomes]
rs10484352	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13190874	0.95[EUR][1000 genomes]
rs13211010	0.93[EUR][1000 genomes]
rs13218971	0.93[EUR][1000 genomes]
rs16877105	0.95[EUR][1000 genomes]
rs16877108	0.93[EUR][1000 genomes]
rs16877113	0.93[EUR][1000 genomes]
rs17418707	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17419263	0.84[EUR][1000 genomes]
rs1927587	0.93[EUR][1000 genomes]
rs34459959	0.88[EUR][1000 genomes]
rs35387263	0.87[EUR][1000 genomes]
rs35511116	0.93[EUR][1000 genomes]
rs41465249	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41499644	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4712259	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4712260	0.96[EUR][1000 genomes]
rs4712261	0.93[EUR][1000 genomes]
rs4716000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4716002	0.95[EUR][1000 genomes]
rs4716003	0.91[EUR][1000 genomes]
rs4716005	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4989041	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55715119	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55756972	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56207716	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56314144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459416	1.00[YRI][hapmap]
rs67428710	0.91[EUR][1000 genomes]
rs6912998	1.00[YRI][hapmap]
rs73366628	0.97[EUR][1000 genomes]
rs7745776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970653	chr6:15826001-15833990	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15825800-15842800	Weak transcription	Right Atrium	heart
2	chr6:15828800-15830000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15828800-15830200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:15829000-15830000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15829000-15830200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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