Variant report

Variant	rs16877108
Chromosome Location	chr6:15840679-15840680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15838342..15841785-chr6:16134633..16137410,3	K562	blood:
2	chr6:15838685..15840880-chr6:15842392..15845284,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484351	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484352	0.95[EUR][1000 genomes]
rs13190874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203015	1.00[ASN][1000 genomes]
rs13211010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220668	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16877105	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418707	0.93[EUR][1000 genomes]
rs17419263	0.81[EUR][1000 genomes]
rs17419416	1.00[JPT][hapmap]
rs1927587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057168	1.00[ASN][1000 genomes]
rs34459959	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34486559	1.00[ASN][1000 genomes]
rs34837879	0.97[ASN][1000 genomes]
rs35057201	1.00[ASN][1000 genomes]
rs35387263	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35446927	1.00[ASN][1000 genomes]
rs35511116	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563909	0.98[ASN][1000 genomes]
rs41499644	0.95[EUR][1000 genomes]
rs4712259	0.92[EUR][1000 genomes]
rs4712260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712261	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716000	0.93[EUR][1000 genomes]
rs4716002	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716003	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4989041	0.93[EUR][1000 genomes]
rs55715119	0.95[EUR][1000 genomes]
rs55756972	0.95[EUR][1000 genomes]
rs56207716	0.95[EUR][1000 genomes]
rs56213114	0.87[ASN][1000 genomes]
rs56314144	0.93[EUR][1000 genomes]
rs67428710	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71554545	1.00[ASN][1000 genomes]
rs73366628	0.96[EUR][1000 genomes]
rs7745776	0.93[EUR][1000 genomes]
rs7749868	0.93[EUR][1000 genomes]
rs7750026	0.93[EUR][1000 genomes]
rs9358074	0.88[JPT][hapmap]
rs9370839	0.86[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16877108	ID4	cis	cerebellum	SCAN
rs16877108	MYLIP	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15825800-15842800	Weak transcription	Right Atrium	heart
2	chr6:15837600-15843800	Weak transcription	K562	blood
3	chr6:15840200-15841000	Enhancers	Brain Substantia Nigra	brain
4	chr6:15840200-15841200	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:15840600-15842200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:15840600-15844000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:15840600-15845200	Weak transcription	Brain Angular Gyrus	brain

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