Variant report

Variant	rs17478991
Chromosome Location	chr3:161209750-161209751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17421738	0.82[AMR][1000 genomes]
rs17421877	0.92[AMR][1000 genomes]
rs17421926	0.92[AMR][1000 genomes]
rs73164129	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73164178	1.00[AFR][1000 genomes]
rs73164187	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73166012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166056	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73166074	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73166075	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73168003	0.88[AMR][1000 genomes]
rs7610047	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161205800-161210000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:161208000-161210000	Enhancers	Liver	Liver
3	chr3:161208000-161210200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:161208600-161210200	Weak transcription	GM12878-XiMat	blood
5	chr3:161209600-161210000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:161209600-161210200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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