Variant report
| Variant | rs17421877 |
|---|---|
| Chromosome Location | chr3:161284642-161284643 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1515736 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16833090 | 0.80[AMR][1000 genomes] |
| rs17421738 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17421926 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17478991 | 0.92[AMR][1000 genomes] |
| rs17479046 | 0.86[CEU][hapmap] |
| rs2896903 | 0.80[AMR][1000 genomes] |
| rs59111786 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6780945 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6788534 | 0.92[EUR][1000 genomes] |
| rs6797876 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73164190 | 0.88[EUR][1000 genomes] |
| rs73166012 | 0.92[AMR][1000 genomes] |
| rs73166018 | 0.92[EUR][1000 genomes] |
| rs73166030 | 0.92[EUR][1000 genomes] |
| rs73166056 | 0.92[AMR][1000 genomes] |
| rs73166066 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73166074 | 0.96[AMR][1000 genomes] |
| rs73166075 | 0.96[AMR][1000 genomes] |
| rs73168003 | 0.88[AMR][1000 genomes] |
| rs73168016 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161278400-161289400 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr3:161284600-161286000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
