Variant report
| Variant | rs17479046 |
|---|---|
| Chromosome Location | chr3:161210575-161210576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1159250 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs17421738 | 0.92[EUR][1000 genomes] |
| rs17421877 | 0.92[EUR][1000 genomes] |
| rs17421926 | 0.90[EUR][1000 genomes] |
| rs2404344 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4560316 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs55663755 | 0.80[ASN][1000 genomes] |
| rs58302911 | 0.80[ASN][1000 genomes] |
| rs59111786 | 0.95[EUR][1000 genomes] |
| rs59808131 | 0.80[ASN][1000 genomes] |
| rs60273956 | 0.80[ASN][1000 genomes] |
| rs6780945 | 0.92[EUR][1000 genomes] |
| rs6788534 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6797876 | 0.95[EUR][1000 genomes] |
| rs73164132 | 0.80[ASN][1000 genomes] |
| rs73164149 | 0.80[ASN][1000 genomes] |
| rs73164153 | 0.80[ASN][1000 genomes] |
| rs73164177 | 0.80[ASN][1000 genomes] |
| rs73164190 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73166018 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73166030 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73166066 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| 3 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
