Variant report
| Variant | rs73164190 |
|---|---|
| Chromosome Location | chr3:161200099-161200100 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs17421738 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17421877 | 0.88[EUR][1000 genomes] |
| rs17421926 | 0.87[EUR][1000 genomes] |
| rs2404345 | 0.88[AFR][1000 genomes] |
| rs59111786 | 0.91[EUR][1000 genomes] |
| rs60069838 | 0.93[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6780945 | 0.88[EUR][1000 genomes] |
| rs6788534 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6797876 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73164106 | 0.81[AFR][1000 genomes] |
| rs73164124 | 0.84[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73164152 | 0.90[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73164176 | 0.90[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73166018 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73166030 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73166066 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73875621 | 0.82[ASN][1000 genomes] |
| rs73875623 | 0.88[AFR][1000 genomes] |
| rs73878333 | 0.81[AFR][1000 genomes] |
| rs73878336 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| 3 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| 4 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161199800-161200400 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
