Variant report

Variant	rs73878336
Chromosome Location	chr3:161152733-161152734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:161085159..161090097-chr3:161151244..161155377,5	MCF-7	breast:
2	chr3:161149987..161152257-chr3:161152281..161153980,2	MCF-7	breast:
3	chr3:161144496..161147090-chr3:161151361..161154232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269888	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12163614	0.88[AFR][1000 genomes]
rs12631095	1.00[EUR][1000 genomes]
rs12631808	1.00[EUR][1000 genomes]
rs12632351	1.00[EUR][1000 genomes]
rs12632632	1.00[EUR][1000 genomes]
rs12632686	1.00[EUR][1000 genomes]
rs12634781	1.00[EUR][1000 genomes]
rs12635895	1.00[EUR][1000 genomes]
rs12639236	1.00[EUR][1000 genomes]
rs16832385	1.00[EUR][1000 genomes]
rs2404345	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914832	1.00[EUR][1000 genomes]
rs56230831	1.00[EUR][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57175632	1.00[EUR][1000 genomes]
rs57212203	1.00[EUR][1000 genomes]
rs58550445	1.00[EUR][1000 genomes]
rs60069838	0.88[AFR][1000 genomes]
rs60172527	1.00[EUR][1000 genomes]
rs60739746	1.00[EUR][1000 genomes]
rs72494862	1.00[EUR][1000 genomes]
rs72494864	1.00[EUR][1000 genomes]
rs73021435	1.00[EUR][1000 genomes]
rs73164106	0.95[AFR][1000 genomes]
rs73164124	0.97[AFR][1000 genomes]
rs73164152	0.90[AFR][1000 genomes]
rs73164176	0.90[AFR][1000 genomes]
rs73164190	0.81[AFR][1000 genomes]
rs73875481	1.00[EUR][1000 genomes]
rs73875497	1.00[EUR][1000 genomes]
rs73875623	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878306	1.00[EUR][1000 genomes]
rs73878333	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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