Variant report

Variant	rs60172527
Chromosome Location	chr3:161114448-161114449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12631095	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12631808	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12632351	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12632514	1.00[EUR][1000 genomes]
rs12632537	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12632632	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12632686	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634781	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12635895	1.00[EUR][1000 genomes]
rs12639236	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16832385	1.00[EUR][1000 genomes]
rs2404345	1.00[EUR][1000 genomes]
rs55914832	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56230831	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57175632	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57212203	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58550445	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59541314	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60400555	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60739746	1.00[EUR][1000 genomes]
rs72494862	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72494864	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73021435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875481	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73875497	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73875623	1.00[EUR][1000 genomes]
rs73878306	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73878313	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73878321	0.84[ASN][1000 genomes]
rs73878322	0.84[ASN][1000 genomes]
rs73878324	0.82[ASN][1000 genomes]
rs73878325	0.82[ASN][1000 genomes]
rs73878328	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73878333	1.00[EUR][1000 genomes]
rs73878336	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161110000-161114600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:161110200-161114600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:161113000-161114600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:161113400-161115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:161113600-161118000	Weak transcription	Liver	Liver
6	chr3:161113600-161118000	Weak transcription	HepG2	liver
7	chr3:161113600-161127600	Weak transcription	NHEK	skin
8	chr3:161114000-161116000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:161114000-161116200	Weak transcription	Primary T cells from cord blood	blood
10	chr3:161114400-161116000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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