Variant report

Variant	rs59541314
Chromosome Location	chr3:161101908-161101909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160584041..160586531-chr3:161100253..161101953,2	K562	blood:
2	chr3:161097507..161100487-chr3:161101328..161104049,2	K562	blood:
3	chr3:160344731..160346992-chr3:161101711..161103995,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12632537	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634006	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16832203	0.96[EUR][1000 genomes]
rs57175632	0.84[ASN][1000 genomes]
rs57278490	0.87[EUR][1000 genomes]
rs57496534	0.87[EUR][1000 genomes]
rs57803909	0.87[EUR][1000 genomes]
rs58350275	0.87[EUR][1000 genomes]
rs58550445	0.86[AFR][1000 genomes]
rs58557417	0.80[EUR][1000 genomes]
rs58562874	0.87[EUR][1000 genomes]
rs59761692	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59964190	0.87[EUR][1000 genomes]
rs60172527	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60400555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60612225	0.87[EUR][1000 genomes]
rs60684226	0.87[EUR][1000 genomes]
rs61048679	1.00[AMR][1000 genomes]
rs61217744	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73021435	0.84[ASN][1000 genomes]
rs73878307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878308	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878311	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878321	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878322	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878325	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7625217	0.87[EUR][1000 genomes]
rs873183	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs896080	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161091400-161102800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links