Variant report

Variant	rs61048679
Chromosome Location	chr3:161148243-161148244
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513566	1.00[ASN][1000 genomes]
rs12632537	1.00[AMR][1000 genomes]
rs17418895	1.00[ASN][1000 genomes]
rs57278490	0.86[ASN][1000 genomes]
rs57496534	0.86[ASN][1000 genomes]
rs57803909	0.86[ASN][1000 genomes]
rs58350275	0.86[ASN][1000 genomes]
rs58562874	0.86[ASN][1000 genomes]
rs59541314	1.00[AMR][1000 genomes]
rs59686054	1.00[ASN][1000 genomes]
rs59777031	1.00[ASN][1000 genomes]
rs59964190	0.86[ASN][1000 genomes]
rs60400555	1.00[AMR][1000 genomes]
rs60612225	0.86[ASN][1000 genomes]
rs60684226	0.86[ASN][1000 genomes]
rs73878307	1.00[AMR][1000 genomes]
rs73878313	1.00[AMR][1000 genomes]
rs73878321	1.00[AMR][1000 genomes]
rs73878322	1.00[AMR][1000 genomes]
rs73878324	1.00[AMR][1000 genomes]
rs73878325	1.00[AMR][1000 genomes]
rs73878328	1.00[AMR][1000 genomes]
rs7625217	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161147600-161149000	Enhancers	HepG2	liver
2	chr3:161148200-161148400	Enhancers	Brain Anterior Caudate	brain
3	chr3:161148200-161148600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:161148200-161148600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:161148200-161148600	Enhancers	Brain Hippocampus Middle	brain
6	chr3:161148200-161148600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:161148200-161148600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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