Variant report

Variant	rs10513566
Chromosome Location	chr3:161216244-161216245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16832548	0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17418895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336556	1.00[LWK][hapmap]
rs336564	1.00[LWK][hapmap]
rs57278490	0.86[ASN][1000 genomes]
rs57496534	0.86[ASN][1000 genomes]
rs57803909	0.86[ASN][1000 genomes]
rs58350275	0.86[ASN][1000 genomes]
rs58562874	0.86[ASN][1000 genomes]
rs59686054	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59777031	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59964190	0.86[ASN][1000 genomes]
rs60612225	0.86[ASN][1000 genomes]
rs60684226	0.86[ASN][1000 genomes]
rs61048679	1.00[ASN][1000 genomes]
rs7625217	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161216000-161216600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:161216200-161216800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:161216200-161216800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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