Variant report

Variant	rs12632537
Chromosome Location	chr3:161109267-161109268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161102931..161104858-chr3:161108932..161110703,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12631095	0.86[JPT][hapmap];0.92[YRI][hapmap]
rs12632351	0.91[YRI][hapmap]
rs12632686	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs12634006	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12634319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12634781	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs16832203	0.96[EUR][1000 genomes]
rs16832548	0.81[YRI][hapmap]
rs462514	0.88[JPT][hapmap]
rs56230831	0.85[AFR][1000 genomes]
rs57175632	0.84[ASN][1000 genomes]
rs57278490	0.87[EUR][1000 genomes]
rs57496534	0.87[EUR][1000 genomes]
rs57803909	0.87[EUR][1000 genomes]
rs58350275	0.87[EUR][1000 genomes]
rs58557417	0.80[EUR][1000 genomes]
rs58562874	0.87[EUR][1000 genomes]
rs59541314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761692	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59964190	0.87[EUR][1000 genomes]
rs60172527	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60400555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60612225	0.87[EUR][1000 genomes]
rs60684226	0.87[EUR][1000 genomes]
rs61048679	1.00[AMR][1000 genomes]
rs61217744	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6788738	1.00[CEU][hapmap]
rs73021435	0.84[ASN][1000 genomes]
rs73878307	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878308	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878311	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73878313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878322	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73878328	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7625217	0.87[EUR][1000 genomes]
rs873183	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs896080	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12632537	C3orf57	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161107800-161112800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:161108000-161111400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:161108200-161110200	Weak transcription	Gastric	stomach
4	chr3:161108200-161111800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:161108600-161111600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:161108800-161109400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:161108800-161114400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:161109000-161110200	Weak transcription	Stomach Mucosa	stomach

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