Variant report

Variant	rs16832203
Chromosome Location	chr3:161102719-161102720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12632537	0.96[EUR][1000 genomes]
rs12634006	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12634319	1.00[CEU][hapmap]
rs57278490	0.84[EUR][1000 genomes]
rs57496534	0.84[EUR][1000 genomes]
rs57803909	0.84[EUR][1000 genomes]
rs58350275	0.84[EUR][1000 genomes]
rs58562874	0.84[EUR][1000 genomes]
rs59541314	0.96[EUR][1000 genomes]
rs59761692	0.88[EUR][1000 genomes]
rs59964190	0.84[EUR][1000 genomes]
rs60400555	0.96[EUR][1000 genomes]
rs60612225	0.84[EUR][1000 genomes]
rs60684226	0.84[EUR][1000 genomes]
rs61217744	0.88[EUR][1000 genomes]
rs6787697	0.82[AMR][1000 genomes]
rs6788738	1.00[CEU][hapmap]
rs73878307	0.88[EUR][1000 genomes]
rs73878308	0.88[EUR][1000 genomes]
rs73878311	0.88[EUR][1000 genomes]
rs73878313	0.96[EUR][1000 genomes]
rs73878321	0.96[EUR][1000 genomes]
rs73878322	0.96[EUR][1000 genomes]
rs73878324	0.96[EUR][1000 genomes]
rs73878325	0.96[EUR][1000 genomes]
rs73878328	0.96[EUR][1000 genomes]
rs7625217	0.84[EUR][1000 genomes]
rs873183	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs896080	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv518101	chr3:161102097-161102861	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161091400-161102800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links