Variant report

Variant	rs58550445
Chromosome Location	chr3:161069876-161069877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12631095	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12631808	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12632351	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12632514	1.00[EUR][1000 genomes]
rs12632632	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12632686	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634006	0.86[ASN][1000 genomes]
rs12634781	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12635895	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12639236	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16832385	1.00[EUR][1000 genomes]
rs2404345	1.00[EUR][1000 genomes]
rs55914832	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56230831	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57175632	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57212203	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58404146	1.00[EUR][1000 genomes]
rs59541314	0.86[AFR][1000 genomes]
rs59761692	0.86[ASN][1000 genomes]
rs60172527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60400555	0.86[AFR][1000 genomes]
rs61217744	0.86[ASN][1000 genomes]
rs61631170	1.00[EUR][1000 genomes]
rs72494862	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72494864	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73021435	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73875481	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73875497	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73875623	1.00[EUR][1000 genomes]
rs73878306	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73878307	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73878308	0.86[ASN][1000 genomes]
rs73878311	0.86[ASN][1000 genomes]
rs73878313	0.86[AFR][1000 genomes]
rs73878321	0.82[AFR][1000 genomes]
rs73878322	0.82[AFR][1000 genomes]
rs73878324	0.82[AFR][1000 genomes]
rs73878325	0.82[AFR][1000 genomes]
rs73878333	1.00[EUR][1000 genomes]
rs73878336	1.00[EUR][1000 genomes]
rs873183	0.86[ASN][1000 genomes]
rs896080	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:161060600-161070200	Weak transcription	Esophagus	oesophagus
4	chr3:161064400-161083000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:161068200-161083200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:161068400-161075800	Weak transcription	Stomach Mucosa	stomach
7	chr3:161068400-161083200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:161068800-161079000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:161069000-161070600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:161069400-161072200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:161069600-161070000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:161069600-161075400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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