Variant report
| Variant | rs58404146 |
|---|---|
| Chromosome Location | chr3:160863380-160863381 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:160822154..160825003-chr3:160861960..160864146,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169255 | Chromatin interaction |
| ENSG00000169251 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12631095 | 1.00[EUR][1000 genomes] |
| rs12631808 | 1.00[EUR][1000 genomes] |
| rs12632351 | 1.00[EUR][1000 genomes] |
| rs12632514 | 1.00[EUR][1000 genomes] |
| rs12632632 | 1.00[EUR][1000 genomes] |
| rs12632686 | 1.00[EUR][1000 genomes] |
| rs12634108 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12634781 | 1.00[EUR][1000 genomes] |
| rs12635895 | 1.00[EUR][1000 genomes] |
| rs12636473 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12639236 | 1.00[EUR][1000 genomes] |
| rs13313977 | 1.00[EUR][1000 genomes] |
| rs16831667 | 1.00[EUR][1000 genomes] |
| rs16831679 | 1.00[EUR][1000 genomes] |
| rs34868645 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs55914832 | 1.00[EUR][1000 genomes] |
| rs56230831 | 1.00[EUR][1000 genomes] |
| rs56378191 | 1.00[EUR][1000 genomes] |
| rs57212203 | 1.00[EUR][1000 genomes] |
| rs57649180 | 1.00[EUR][1000 genomes] |
| rs58013864 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58550445 | 1.00[EUR][1000 genomes] |
| rs61560039 | 1.00[EUR][1000 genomes] |
| rs61631170 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61693724 | 1.00[EUR][1000 genomes] |
| rs6773475 | 1.00[EUR][1000 genomes] |
| rs6774622 | 1.00[EUR][1000 genomes] |
| rs6794409 | 1.00[EUR][1000 genomes] |
| rs6807237 | 1.00[EUR][1000 genomes] |
| rs72494862 | 1.00[EUR][1000 genomes] |
| rs72494864 | 1.00[EUR][1000 genomes] |
| rs73875444 | 1.00[EUR][1000 genomes] |
| rs73875481 | 1.00[EUR][1000 genomes] |
| rs73875497 | 1.00[EUR][1000 genomes] |
| rs73878306 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160850400-160882400 | Weak transcription | Ovary | ovary |
| 2 | chr3:160860400-160866600 | Weak transcription | NHDF-Ad | bronchial |
| 3 | chr3:160862200-160882400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
