Variant report

Variant	rs12634108
Chromosome Location	chr3:160799867-160799868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160797537..160800169-chr3:160939583..160942186,2	K562	blood:
2	chr3:160792949..160795432-chr3:160798815..160800745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271052	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12631808	1.00[EUR][1000 genomes]
rs12632514	1.00[EUR][1000 genomes]
rs12632632	1.00[EUR][1000 genomes]
rs12635895	1.00[EUR][1000 genomes]
rs12636473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639236	1.00[EUR][1000 genomes]
rs13313977	1.00[EUR][1000 genomes]
rs16831667	1.00[EUR][1000 genomes]
rs16831679	1.00[EUR][1000 genomes]
rs34244438	1.00[AMR][1000 genomes]
rs34484892	1.00[AMR][1000 genomes]
rs34868645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35135616	1.00[AMR][1000 genomes]
rs35221490	1.00[AMR][1000 genomes]
rs35414882	1.00[AMR][1000 genomes]
rs35780444	1.00[AMR][1000 genomes]
rs55914832	1.00[EUR][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57649180	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58404146	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61560039	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61631170	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61693724	1.00[EUR][1000 genomes]
rs6773475	1.00[EUR][1000 genomes]
rs6774622	1.00[EUR][1000 genomes]
rs6794409	1.00[EUR][1000 genomes]
rs6807237	1.00[EUR][1000 genomes]
rs72494862	1.00[EUR][1000 genomes]
rs73875444	1.00[EUR][1000 genomes]
rs73875481	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781400-160803400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
4	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:160787600-160803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:160788000-160802800	Weak transcription	Fetal Kidney	kidney
8	chr3:160788200-160803400	Weak transcription	Fetal Brain Female	brain
9	chr3:160788600-160803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:160788600-160807600	Weak transcription	Pancreas	Pancrea
11	chr3:160788800-160803400	Weak transcription	Adipose Nuclei	Adipose
12	chr3:160789200-160803200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
14	chr3:160789800-160802600	Weak transcription	Osteobl	bone
15	chr3:160792800-160803200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:160794800-160800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:160796000-160817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:160796600-160803400	Weak transcription	Fetal Intestine Large	intestine
20	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:160797400-160800600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:160797600-160817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:160798200-160800400	Strong transcription	Fetal Stomach	stomach
24	chr3:160798400-160800200	Enhancers	Fetal Heart	heart
25	chr3:160798400-160800400	Enhancers	Left Ventricle	heart
26	chr3:160798400-160800400	Enhancers	Right Atrium	heart
27	chr3:160798600-160803600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:160798600-160821800	Weak transcription	Brain Angular Gyrus	brain
29	chr3:160798800-160804200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:160799000-160800400	Enhancers	Primary hematopoietic stem cells	blood
31	chr3:160799200-160804200	Weak transcription	Lung	lung
32	chr3:160799400-160800000	Enhancers	Primary B cells from peripheral blood	blood
33	chr3:160799400-160800200	Enhancers	Primary B cells from cord blood	blood
34	chr3:160799400-160800200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:160799400-160800200	Enhancers	GM12878-XiMat	blood
36	chr3:160799400-160800200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr3:160799400-160800400	Enhancers	Right Ventricle	heart
38	chr3:160799400-160800400	Enhancers	Dnd41	blood
39	chr3:160799400-160800600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:160799600-160800000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:160799600-160800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:160799600-160800000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr3:160799600-160800000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr3:160799600-160800000	Enhancers	Fetal Muscle Leg	muscle
45	chr3:160799600-160800200	Enhancers	Fetal Thymus	thymus
46	chr3:160799600-160800400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr3:160799600-160800400	Enhancers	Brain Anterior Caudate	brain
48	chr3:160799600-160800400	Enhancers	Brain Hippocampus Middle	brain
49	chr3:160799600-160800400	Enhancers	HUVEC	blood vessel
50	chr3:160799800-160800000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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