Variant report
| Variant | rs58013864 |
|---|---|
| Chromosome Location | chr3:160928747-160928748 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:160926864..160930138-chr3:160930541..160935617,4 | K562 | blood: | |
| 2 | chr3:160927027..160929410-chr3:161139082..161141538,2 | MCF-7 | breast: | |
| 3 | chr3:160925870..160928763-chr3:160931086..160933417,3 | MCF-7 | breast: | |
| 4 | chr3:160927302..160930020-chr3:160939040..160941998,3 | K562 | blood: | |
| 5 | chr3:160926575..160929147-chr3:160933647..160936135,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169251 | Chromatin interaction |
| ENSG00000271052 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs12631095 | 1.00[EUR][1000 genomes] |
| rs12631808 | 1.00[EUR][1000 genomes] |
| rs12632351 | 1.00[EUR][1000 genomes] |
| rs12632514 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12632632 | 1.00[EUR][1000 genomes] |
| rs12632686 | 1.00[EUR][1000 genomes] |
| rs12634108 | 1.00[EUR][1000 genomes] |
| rs12634781 | 1.00[EUR][1000 genomes] |
| rs12635895 | 1.00[EUR][1000 genomes] |
| rs12636473 | 1.00[EUR][1000 genomes] |
| rs12639236 | 1.00[EUR][1000 genomes] |
| rs34868645 | 1.00[EUR][1000 genomes] |
| rs55914832 | 1.00[EUR][1000 genomes] |
| rs56230831 | 1.00[EUR][1000 genomes] |
| rs56378191 | 1.00[EUR][1000 genomes] |
| rs57175632 | 1.00[EUR][1000 genomes] |
| rs57212203 | 1.00[EUR][1000 genomes] |
| rs57649180 | 1.00[EUR][1000 genomes] |
| rs58404146 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58550445 | 1.00[EUR][1000 genomes] |
| rs60172527 | 1.00[EUR][1000 genomes] |
| rs61560039 | 1.00[EUR][1000 genomes] |
| rs61631170 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61693724 | 1.00[EUR][1000 genomes] |
| rs6773475 | 1.00[EUR][1000 genomes] |
| rs6774622 | 1.00[EUR][1000 genomes] |
| rs72494862 | 1.00[EUR][1000 genomes] |
| rs72494864 | 1.00[EUR][1000 genomes] |
| rs73021435 | 1.00[EUR][1000 genomes] |
| rs73875444 | 1.00[EUR][1000 genomes] |
| rs73875481 | 1.00[EUR][1000 genomes] |
| rs73875497 | 1.00[EUR][1000 genomes] |
| rs73878306 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015063 | chr3:160918307-161024070 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160926000-160938400 | Weak transcription | Brain Substantia Nigra | brain |
