Variant report
| Variant | rs73875497 |
|---|---|
| Chromosome Location | chr3:161050740-161050741 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:27)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:27 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PSMC1P7 | TF binding region |
| ENSG00000169251 | Chromatin interaction |
| ENSG00000271052 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12631095 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12631808 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12632351 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12632514 | 1.00[EUR][1000 genomes] |
| rs12632632 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12632686 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12634781 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12635895 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12639236 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16832385 | 1.00[EUR][1000 genomes] |
| rs2404345 | 1.00[EUR][1000 genomes] |
| rs55914832 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56230831 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56378191 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57175632 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs57212203 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58013864 | 1.00[EUR][1000 genomes] |
| rs58404146 | 1.00[EUR][1000 genomes] |
| rs58550445 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60172527 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61631170 | 1.00[EUR][1000 genomes] |
| rs72494862 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72494864 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73021435 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73875481 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73875623 | 1.00[EUR][1000 genomes] |
| rs73878306 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73878333 | 1.00[EUR][1000 genomes] |
| rs73878336 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| 2 | nsv829770 | chr3:160989573-161069223 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv4091 | chr3:161018540-161063875 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 5 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161048200-161051800 | Enhancers | HepG2 | liver |
| 2 | chr3:161050600-161051000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr3:161050600-161052200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
