Variant report

Variant	rs73875481
Chromosome Location	chr3:161031762-161031763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:161030291..161037720-chr3:161038093..161046558,15	MCF-7	breast:
2	chr3:161031627..161035949-chr3:161055362..161059558,6	MCF-7	breast:
3	chr3:160998590..161004098-chr3:161031167..161035957,5	MCF-7	breast:
4	chr3:161031670..161034485-chr3:161051893..161053628,2	MCF-7	breast:
5	chr3:161030909..161038608-chr3:161038848..161046580,20	MCF-7	breast:
6	chr3:161007104..161011008-chr3:161031241..161034660,5	MCF-7	breast:
7	chr3:161027478..161029275-chr3:161031278..161032778,2	MCF-7	breast:
8	chr3:161011142..161013690-chr3:161030216..161032723,2	MCF-7	breast:
9	chr3:161025819..161030681-chr3:161030815..161036788,8	MCF-7	breast:
10	chr3:161026928..161036306-chr3:161081784..161094254,31	MCF-7	breast:
11	chr3:161031194..161033997-chr3:161131950..161133763,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000240138	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12631095	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631808	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632351	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632514	1.00[EUR][1000 genomes]
rs12632632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632686	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634108	1.00[EUR][1000 genomes]
rs12634781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635895	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12636473	1.00[EUR][1000 genomes]
rs12639236	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832385	1.00[EUR][1000 genomes]
rs2404345	1.00[EUR][1000 genomes]
rs34868645	1.00[EUR][1000 genomes]
rs55914832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56230831	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56378191	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57175632	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57212203	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58404146	1.00[EUR][1000 genomes]
rs58550445	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60172527	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61631170	1.00[EUR][1000 genomes]
rs72494862	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494864	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73021435	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73875497	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875623	1.00[EUR][1000 genomes]
rs73878306	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73878333	1.00[EUR][1000 genomes]
rs73878336	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161017000-161033000	Weak transcription	Left Ventricle	heart
2	chr3:161017600-161032600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:161025400-161031800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:161026600-161032400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:161027000-161032000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:161027000-161032600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:161027000-161032800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:161027200-161032600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:161027800-161031800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:161028600-161031800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:161028600-161032600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:161029200-161032200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:161029800-161032600	Weak transcription	GM12878-XiMat	blood
14	chr3:161030800-161033000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:161031200-161032000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:161031600-161032400	Weak transcription	Primary T cells from cord blood	blood
17	chr3:161031600-161032600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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