Variant report

Variant	rs16832385
Chromosome Location	chr3:161170505-161170506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161157860..161160581-chr3:161168208..161171597,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1002490	1.00[AMR][1000 genomes]
rs1159250	1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes]
rs12631095	1.00[EUR][1000 genomes]
rs12631808	1.00[EUR][1000 genomes]
rs12632351	1.00[EUR][1000 genomes]
rs12632632	1.00[EUR][1000 genomes]
rs12632686	1.00[EUR][1000 genomes]
rs12634781	1.00[EUR][1000 genomes]
rs12635895	1.00[EUR][1000 genomes]
rs12639236	1.00[EUR][1000 genomes]
rs1349353	1.00[AMR][1000 genomes]
rs16832443	1.00[AMR][1000 genomes]
rs17479046	1.00[JPT][hapmap]
rs2404344	1.00[ASW][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes]
rs2404345	1.00[EUR][1000 genomes]
rs4560316	1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes]
rs55663755	0.97[AFR][1000 genomes]
rs55914832	1.00[EUR][1000 genomes]
rs56230831	1.00[EUR][1000 genomes]
rs57175632	1.00[EUR][1000 genomes]
rs57212203	1.00[EUR][1000 genomes]
rs58302911	0.99[AFR][1000 genomes]
rs58550445	1.00[EUR][1000 genomes]
rs59808131	0.97[AFR][1000 genomes]
rs60172527	1.00[EUR][1000 genomes]
rs60273956	0.97[AFR][1000 genomes]
rs60680460	1.00[EUR][1000 genomes]
rs60739746	1.00[EUR][1000 genomes]
rs72494862	1.00[EUR][1000 genomes]
rs72494864	1.00[EUR][1000 genomes]
rs73021435	1.00[EUR][1000 genomes]
rs73164132	0.97[AFR][1000 genomes]
rs73164149	0.99[AFR][1000 genomes]
rs73164153	0.97[AFR][1000 genomes]
rs73164177	0.97[AFR][1000 genomes]
rs73875481	1.00[EUR][1000 genomes]
rs73875497	1.00[EUR][1000 genomes]
rs73875623	1.00[EUR][1000 genomes]
rs73875625	1.00[AMR][1000 genomes]
rs73875627	1.00[AMR][1000 genomes]
rs73878306	1.00[EUR][1000 genomes]
rs73878333	1.00[EUR][1000 genomes]
rs73878336	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv967084	chr3:161163639-161183247	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161170200-161170600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:161170200-161170600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
3	chr3:161170400-161171800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:161170400-161171800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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