Variant report

Variant	rs60680460
Chromosome Location	chr3:161360173-161360174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12639130	0.81[ASN][1000 genomes]
rs13325090	1.00[EUR][1000 genomes]
rs16832385	1.00[EUR][1000 genomes]
rs16833201	1.00[EUR][1000 genomes]
rs2404345	1.00[EUR][1000 genomes]
rs28559591	1.00[EUR][1000 genomes]
rs59860665	1.00[EUR][1000 genomes]
rs59865680	1.00[EUR][1000 genomes]
rs60125032	1.00[EUR][1000 genomes]
rs60739746	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6780511	1.00[EUR][1000 genomes]
rs73875623	1.00[EUR][1000 genomes]
rs73875904	1.00[EUR][1000 genomes]
rs73877461	1.00[EUR][1000 genomes]
rs73877481	1.00[EUR][1000 genomes]
rs73877483	1.00[EUR][1000 genomes]
rs73877484	1.00[EUR][1000 genomes]
rs9820241	1.00[EUR][1000 genomes]
rs9876196	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161356000-161362800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:161356600-161360800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:161358400-161361800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:161358800-161361000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:161359000-161360600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:161359000-161361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:161359200-161360400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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